BAC Information

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BAC

Clone NameMSMg01-486K09
Chromosome14 (Build37)
Map Location 51,708,231 - 51,708,571
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441
Downstream geneRnase4, Ang1, Gm75, Rnase6, Rnase1, Ear5, Ear-ps1, Ang2, Ear14, Ear11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486K09.T7 (MSMg01no486_k09.b1)MSMg01-486K09.TJ (MSMg01no486_k09.g1)
ACCAG565802AG565803
length740759
length of high quality
(start - end)
341 (83 - 423)160 (70 - 229)
definitionCHROMAT_FILE: MSMg01no486_k09.b1 PHD_FILE: MSMg01no486_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:00 2005CHROMAT_FILE: MSMg01no486_k09.g1 PHD_FILE: MSMg01no486_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GCGCGGAATTCCAACATCTTCACCGAAATGGACTAAAATATAATTTTAGT
TTGCTTGTTTTCTAACTCCCCCAAAAAACCAGCAACCGAATCCTTTTCTA
AGAAAGAGAGAAACTGTGATCTGTGTGGCCCTATAGCTCAGGGGTTAGAG
CACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAAATCTCGCTGGGGCCTG
AGTCTACCTAGACTTTTGAGCACAGGATTTTCTGGCAGTCTGTCGCTAAA
CTTCCAAAAACGTCGTTGGCTTTTTGTTCCAGTGCAATCCCACACCCCTG
CGCGCTCTGCACTCTGAGAAAGGGGGGCAGCCTGCTATGCGCACGGAGAT
CGGACGAAGGGAAAGTTGATCCCTTACAAAAGTTGGGCAGAAAGAAGTAG
GACTGGCCCCCTCGTGCTGTACGGTGAGGCTACAGGTACAGGAGCCAGAG
GCCCTGGGAATCCAGATACTTCACTGTCTCGCGCAGGAAATAAAGCACCG
CAGTTGTCGTGAGACCTTGGTCACTAAACCATGGAATGGGACTCAAAAAG
GTGTTGGTATGACTTCCATTTAAAAGAATGGCCTTTCTCCAAGGAGAGCT
TCCTTATTGTTAAATTGCTGAGGGTAAATCCTGTGGATCTCCCCCTAGTT
TAACCTAAGTTTTATCTAAGTCTACGCCCTCCATCCCCCT
CAATGCTGTGAGAAGCCTGGGGGCCGCCTTTTTCAAAAATTTAGGTGAAC
TATAGAATTACTAAAAAATTCACCTAGGGGGAGACAGCACAATTGGGACA
GGGGAATTCCATATACGCATTTGTCCATTGCCACAAGCTGCATAGAGTAG
AGGAGCGTTTTGTTTGTTTGTTAGTGTGTTTGTTTGTTTTGTTTTGTTTT
TTTAAAAAGGAAAATGATAACAACAATAACAACAACAACAACAACAACTA
TAAAAAACAAGCCAAAACAAAACCAAATGTTAGAACAATTCTTACCTCAA
GCAGATTTAGGCTGTTTTTTTTTCCCAAGCATGATGGTAAATATACCAAT
GACATGAGGAAGAAAAAGAAAGAGAGAGAGAATAGGTTTCAGAAAAGCAG
TTGTCACCTGTCCGGCCACTCGTTAGCAAAAGAGAAAGATAACGAATTTC
TTAAGTCTCCTACGGACAGGAGGAAATCACGAGATGTCCTTCCTCCTCTC
CGTCTCCTACTGGACACATTCATAGCTATGGATACTTCACGTTCTCTTCC
CCCCCATGCCAGCATTTATCTTGGTTATTGCCCAGAACACCCTTTATGCC
ATTTTGTATATCATTTGTCTAAACTACATGTTGTTACAATTTGCTTCCAT
GAATGCTCTCCGAATTCCCCGCAAATTTTGTGTATATTATCCCTTATAAC
CCTTGGCCATACTGTTCCTCACCATATTCCTTCATCTTAATCGCTTTTTT
CCCTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_k09.b1 MSMg01no486_k09.b1 CHROMAT_FILE:
MSMg01no486_k09.b1 PHD_FILE: MSMg01no486_k09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:00 2005
         (341 letters)



>mm_chr14_51708031_51708771
          Length = 741

 Score =  652 bits (337), Expect = 0.0
 Identities = 340/341 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaatataattttagtttgcttgttttctaactcccccaaaaaaccagcaaccgaatc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 ctaaaatataattttagtttgcttgttttctaacgcccccaaaaaaccagcaaccgaatc 260

                                                                       
Query: 61  cttttctaagaaagagagaaactgtgatctgtgtggccctatagctcaggggttagagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttctaagaaagagagaaactgtgatctgtgtggccctatagctcaggggttagagca 320

                                                                       
Query: 121 ctggtcttgtaaaccaggggtcgcgagttcaaatctcgctggggcctgagtctacctaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggtcttgtaaaccaggggtcgcgagttcaaatctcgctggggcctgagtctacctaga 380

                                                                       
Query: 181 cttttgagcacaggattttctggcagtctgtcgctaaacttccaaaaacgtcgttggctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttgagcacaggattttctggcagtctgtcgctaaacttccaaaaacgtcgttggctt 440

                                                                       
Query: 241 tttgttccagtgcaatcccacacccctgcgcgctctgcactctgagaaaggggggcagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgttccagtgcaatcccacacccctgcgcgctctgcactctgagaaaggggggcagcc 500

                                                    
Query: 301 tgctatgcgcacggagatcggacgaagggaaagttgatccc 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctatgcgcacggagatcggacgaagggaaagttgatccc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)