BAC Information

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BAC

Clone NameMSMg01-486O12
Chromosome14 (Build37)
Map Location 100,020,034 - 100,196,239
singlet/doubletdoublet
Overlap geneLOC668672
Upstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486O12.T7 (MSMg01no486_o12.b1)MSMg01-486O12.TJ (MSMg01no486_o12.g1)
ACCAG565998AG565999
length743747
length of high quality
(start - end)
220 (98 - 317)306 (330 - 635)
definitionCHROMAT_FILE: MSMg01no486_o12.b1 PHD_FILE: MSMg01no486_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:21 2005CHROMAT_FILE: MSMg01no486_o12.g1 PHD_FILE: MSMg01no486_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,020,034 - 100,020,253)(100,195,934 - 100,196,239)
sequence
CTCTTCTTAAATTTGCGGGCGCGAAACGAAGCACAAATTCAAACCAGGGG
CGGAANNTNAGATNCTGACAAAAAAAGAGGAGGNNNGNNNGANNNCNATA
GCCTCCCTCCTCTAATCTGTCTGGCACCTGAAATTAGTCTAGACAAACCT
CACTTGAATTGTGTTATGAGAACACATTTTGAAAGCGATGAAGAATAAAG
TATGGCAATTTTTAAACTAGATAATTAATAGCTCTCATACATAGTAAAAT
ATATTTTATCTGTTTTTCTCAACAATTCTTCGTATAGCACCTATAATTAA
CTTTATTCAACCATATAGTTTTTTTTTATAAACATTATTGGATTAACTGC
AGAAACCTTTAATATTATCATGGACATTATACATGTAATAAAATAAGTGT
TATATTATTTATATTTTGCCCACCATAATATAATGTATAATTTATATATA
ATAAAATTTATGATATTAAAACATATTTTATTATATGTGTCATCTCCATG
GTAATATTAAAAGTTTCCGCAGTTAATTCAATAGTATTTGGACTGAATCT
ATAGAGACTAAATTTTGCTCACTTTGTTCCTATATTGTACATACTTGTGT
ATATATATTATACTCTAATATATGTTCTTACCCTACTTTAATATAATTAT
ACCATTTTTTTTTTTGAAAACCCCTTTTTAACCATACATTTACCCCCTAA
ATACTAAGTCACTTTACCCTGGGAAAATATAGCCACTTAATTT
CCAAGTGATAGGAGTAGGNNTGGGGGNCGCCGTTTCATCATAATTTAGGN
GACACNANAGAATGCCAAAAAAAAATTCAANCACATCATCAGGGTGGAGA
ATTTATTGTGGGGGCGATTAAAACTTACATCAGAGAAATAATGATCCGTC
CTTTAATGACTCTCCTTTGTAGTGAGCTTAGATCAATATCAACTGTTTGT
TTTATTTGAGCTCTTCGATTTTTCCCTCTTAAAGAAGATATTGCGTGACC
ATGTTAGCTCAAGAACTAGGGGAAACTCACAAGTGTTTGGCAGGAAAGGG
GAAAGTAGGGATAAAATTGCTCATTCGTTTGGTCCTTGCAAAGAAACACT
TGCAATGCAAACCACCCAACTAACCACCAAGAATGGAAACTGAAATCAGA
TTCTCCTTTGTCTAACTCTTACAAAAGCATGGTAAACTCATAGAAAGAGG
CAAAGGAAATAGAAAAGCTTGAGGTTGTGAACAGATTATGTTAAATGAAT
TTCCTTAGCGTCCCTTTTGAGGGCAGCCATTCAGTGAAGTGACTTAATTA
GTACCACTTTTAATCTTCCCCTGAGTTCTCAATGGTTAGTGCCAGTATTT
TTACTATTACTGTTGTTTAATTTTTTGCCAAAGAAAATGAGGAAGTGAGT
ATTGTTTTTTAAAAACAAAGGATGCTTCTGGAGCAGAACTCAAGTTTCCG
CCTCATGCCTAGTCGGATAGAACTTGTAGAAGAGAAAGATAACATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_o12.b1 MSMg01no486_o12.b1 CHROMAT_FILE:
MSMg01no486_o12.b1 PHD_FILE: MSMg01no486_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:21 2005
         (220 letters)



>mm_chr14_100019834_100020453
          Length = 620

 Score =  387 bits (200), Expect = e-112
 Identities = 215/220 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagcctccctcctctaatctgtctggcacctgaaattagtctagacaaacctcacttga 60
           |||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||
Sbjct: 201 atagcctccctcctctaatctgccaggtagctgaaattagtctagacaaacctcacttga 260

                                                                       
Query: 61  attgtgttatgagaacacattttgaaagcgatgaagaataaagtatggcaatttttaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgtgttatgagaacacattttgaaagcgatgaagaataaagtatggcaatttttaaac 320

                                                                       
Query: 121 tagataattaatagctctcatacatagtaaaatatattttatctgtttttctcaacaatt 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagataattaatagctcttatacatagtaaaatatattttatctgtttttctcaacaatt 380

                                                   
Query: 181 cttcgtatagcacctataattaactttattcaaccatata 220
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcgtatagcacctataattaactttattcaaccatata 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space:   128921
Effective search space used:   128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no486_o12.g1 MSMg01no486_o12.g1 CHROMAT_FILE:
MSMg01no486_o12.g1 PHD_FILE: MSMg01no486_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:21 2005
         (306 letters)



>mm_chr14_100195734_100196439
          Length = 706

 Score =  553 bits (286), Expect = e-162
 Identities = 301/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtccttgcaaagaaacacttgcaatgcaaaccacccaactaaccaccaagaatggaaa 60
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 506 tggtccttgcaaagaaagacttgcaatgcaaaccacccaaccaaccaccaagaatggaaa 447

                                                                       
Query: 61  ctgaaatcagattctcctttgtctaactcttacaaaagcatggtaaactcatagaaagag 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 446 ctgaaatcagattctcctttgtctaattcttacaaaagcatggtaaactcatagaaagag 387

                                                                       
Query: 121 gcaaaggaaatagaaaagcttgaggttgtgaacagattatgttaaatgaatttccttagc 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 386 gcaaaggaaatagaaaagcttgaggttgtgaacagattgtgttaaatgaatttccttagc 327

                                                                       
Query: 181 gtcccttttgagggcagccattcagtgaagtgacttaattagtaccacttttaatcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtcccttttgagggcagccattcagtgaagtgacttaattagtaccacttttaatcttcc 267

                                                                       
Query: 241 cctgagttctcaatggttagtgccagtatttttactattactgttgtttaattttttgcc 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cctgagttctcaatggtcagtgccagtatttttactattactgttgtttaattttttgcc 207

                 
Query: 301 aaagaa 306
           ||||||
Sbjct: 206 aaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space:   207009
Effective search space used:   207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)