BAC Information

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BAC

Clone NameMSMg01-487L19
Chromosome14 (Build37)
Map Location 15,464,645 - 15,465,335
singlet/doubletsinglet
Overlap genenone
Upstream geneA430083B19Rik, EG382844, LOC100042045, Gm281, Thoc7, Atxn7, Psmd6, Olfr720, LOC667125, LOC100042543, Olfr31, Il3ra, LOC627139, Olfr721-ps1, LOC667152
Downstream geneLOC100042147, Slc4a7, Nek10, Lrrc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487L19.T7 (MSMg01no487_l19.b1)MSMg01-487L19.TJ (MSMg01no487_l19.g1)
ACCAG566627AG566628
length769764
length of high quality
(start - end)
679 (74 - 752)691 (72 - 762)
definitionCHROMAT_FILE: MSMg01no487_l19.b1 PHD_FILE: MSMg01no487_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:26 2005CHROMAT_FILE: MSMg01no487_l19.g1 PHD_FILE: MSMg01no487_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAAATCCGCGGA
ATTCAGGCAGGATTACAGAGAATAAATAAATGTTTATACGTCAGTCCAGT
TTTATTTAATATTATTTATAGGGGGGAAATGTTACCTCCTTCCAGCCTAG
CAAGCCTGGCTGTGACCGTCTGCCACTTGGGCGGAGCCACCTGCTGTGCT
GCTTCTCATTCCTCTCCTTTGATGTGCCACTACCTGCCTGAGGCTGAACC
AGCTCCCCAAGATCTTTGGAATTTAACACCAAACTGATCTTCATGAGTTC
CTACTAAAAGGCTGATCTGTCTACTTCAAAGGAACTTTGTGTGGCTAGGA
ATGGGCCTCCCCTCTTCTTTATAAAGTGTGTTGCCCTACACTAAATTTGA
ACCTTGATCAGACTAATGTCTTGGTTCCATCCTTTCTCGTGTCACCTAGG
TTCCCTCTTTTCTTCCATATTCCAAGATGCCTCCCAGGCTCCAACCAGAA
CATGTGAGCTGCTGGCCGGCCTCAACATCAGAGTAAATGTGGCTTCATAG
AATGAATTGGGTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGATTGAG
GAGAGTTGGGATTAGGTCTTCTTTGAAGGTCTGATAGAACTCTGCACTAA
ACCCACCTGGTCCTGGGCTTCTTTTGGTTGGGAGGCTATTGATGACTGCT
TCTATTTCTTTAGGGGAAATGGGACTGTTAAAATCGTTAATCTGATCCTG
ATTTAACTTTGGTACTTGG
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCGAGATGAAAGAGAACTCATAAAGAGAA
GTTAGCCTCGCTTAATTTCTAAGCAGCTTTTGACATACATGTGTAGACAG
ATGTAATTCGAGGCAGCTGAGGTTAACTTCTGTGCGCTCCCTCTCTCTAG
CCGAATGGAGCGACCTCTTCCTTTCACTCCTCTTCCTGAGCCAGACAGAG
CCTATGTGGCCACAGTCAGGCTTGAGTAGTGGAGACACCCGCACCCGCTC
CGAGCTCACACCCCGGTCCAGTGCTTTGGCGGGGCTGTGCTGTGGGGGTG
GGCACTGTCTCCTTGGGGAAGGAAGAAAAGTGTAGGTCAGAAGGGCAAAA
GCGTTCGGGAGGTCTTGCTGGCTTGACTTCCAAAGTCTCCCTGATTGTTG
GTGTGATTCTTAGCTTAGGAGACACAGTGTTTGTTAGTCATTCACACTGG
GATGATATTTAAATATCCCCAAGAGATTTGGAAGTTGCTTTTGTTCCTAC
CTGCAGTAGGCACTATCTGTTTCACTCCTGCCCTGTTTCTTCTTAGTTTC
ACACGTTACTTAACACACACGTGCAACAATGGGTTACCGCAGGAAAATGG
AAAATTCCAGCTGTTATTTAAACCATGGGATCCTGAGGGTCCTGCTTAAT
GTTTCTTTTACCTTTTTTTGTGTTTTCAGGAGAAAACACAAAGGACTTGA
ACTTGCTCATTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_l19.g1 MSMg01no487_l19.g1 CHROMAT_FILE:
MSMg01no487_l19.g1 PHD_FILE: MSMg01no487_l19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:26 2005
         (691 letters)



>mm_chr14_15464445_15465535
          Length = 1091

 Score = 1313 bits (679), Expect = 0.0
 Identities = 688/691 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgagatgaaagagaactcataaagagaagttagcctcgcttaatttctaagcagctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 ccgagatgaaagagaactcataaagagaagttagcctcgcttaatttctaagcagctttt 832

                                                                       
Query: 61  gacatacatgtgtagacagatgtaattcgaggcagctgaggttaacttctgtgcgctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gacatacatgtgtagacagatgtaattcgaggcagctgaggttaacttctgtgcgctccc 772

                                                                       
Query: 121 tctctctagccgaatggagcgacctcttcctttcactcctcttcctgagccagacagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tctctctagccgaatggagcgacctcttcctttcactcctcttcctgagccagacagagc 712

                                                                       
Query: 181 ctatgtggccacagtcaggcttgagtagtggagacacccgcacccgctccgagctcacac 240
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 711 ctatgtggccacagtcaggcttgagtagtggagacacgggcacccgctccgagctcacac 652

                                                                       
Query: 241 cccggtccagtgctttggcggggctgtgctgtgggggtgggcactgtctccttggggaag 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cccggcccagtgctttggcggggctgtgctgtgggggtgggcactgtctccttggggaag 592

                                                                       
Query: 301 gaagaaaagtgtaggtcagaagggcaaaagcgttcgggaggtcttgctggcttgacttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaagaaaagtgtaggtcagaagggcaaaagcgttcgggaggtcttgctggcttgacttcc 532

                                                                       
Query: 361 aaagtctccctgattgttggtgtgattcttagcttaggagacacagtgtttgttagtcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aaagtctccctgattgttggtgtgattcttagcttaggagacacagtgtttgttagtcat 472

                                                                       
Query: 421 tcacactgggatgatatttaaatatccccaagagatttggaagttgcttttgttcctacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tcacactgggatgatatttaaatatccccaagagatttggaagttgcttttgttcctacc 412

                                                                       
Query: 481 tgcagtaggcactatctgtttcactcctgccctgtttcttcttagtttcacacgttactt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tgcagtaggcactatctgtttcactcctgccctgtttcttcttagtttcacacgttactt 352

                                                                       
Query: 541 aacacacacgtgcaacaatgggttaccgcaggaaaatggaaaattccagctgttatttaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aacacacacgtgcaacaatgggttaccgcaggaaaatggaaaattccagctgttatttaa 292

                                                                       
Query: 601 accatgggatcctgagggtcctgcttaatgtttcttttacctttttttgtgttttcagga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 accatgggatcctgagggtcctgcttaatgtttcttttacctttttttgtgttttcagga 232

                                          
Query: 661 gaaaacacaaaggacttgaacttgctcattg 691
           |||||||||||||||||||||||||||||||
Sbjct: 231 gaaaacacaaaggacttgaacttgctcattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)