BAC Information

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BAC

Clone NameMSMg01-487O16
Chromosome14 (Build37)
Map Location 105,098,422 - 105,266,659
singlet/doubletdoublet
Overlap geneD130009I18Rik
Upstream geneSlain1, Ednrb, Pou4f1, 2610206B13Rik
Downstream geneLOC435420, Rbm26, LOC621103, LOC100043466, Ndfip2, LOC620376, LOC100043469
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487O16.T7 (MSMg01no487_o16.b1)MSMg01-487O16.TJ (MSMg01no487_o16.g1)
ACCAG566765AG566766
length763757
length of high quality
(start - end)		691 (73 - 763)668 (77 - 744)
definitionCHROMAT_FILE: MSMg01no487_o16.b1 PHD_FILE: MSMg01no487_o16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:40 2005CHROMAT_FILE: MSMg01no487_o16.g1 PHD_FILE: MSMg01no487_o16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,265,969 - 105,266,659)(105,098,422 - 105,099,089)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATGGACTTCCGAGAATTGAGGGACACATGAGCTAAACTCTGTG
TATAACGAATACTGTAGAGATTCTGATTTCCCAGGAGCCCAGGGATTAAC
ACGAAGTTCTCCATCTGCAGAATTTGCAGGTGACATGACTTCTCAGAGAC
GGTGGGTGAGCACTCCTGAGCAGACACAGCCAGGGTAGGTCGAAGAGGAG
CATATTGGATAGCTTGCTCTCCACCCTCCTCCAGTTCCACACACTCTTCC
TCTTTGTAAATGGAAGCTGACTTTGGGGTAGAAGTAAGGCAAGCTTTTCC
TGAGAATTGAACCAACCAAGAGAAATATAAGTTCACATTTCTTTGGCCCA
AAGGCCTGTCTCCCTTCAACGCTTGTATGCAGAATCTCTAACTTCTAAAT
TAAAAACATTAATAGGTGGAGTATTTTGGAAGTCACTCAATCACAGAACA
AACTACAGGACAAATAATAATGAAACTAGTTTTGTTTTGTTTTTTCTTTA
TATCCAGGTTCTAATGAAAGACAGCCATCCAGAAACCAGACACCAGACCT
ACCAGAACCTTGCTCTTGGACCAGAAATGTGAAGAATAAACTTGCTTGTA
AGTCACTCCATCTATGGTTATTTTGTTATAGCCCCCAAACAGACTAAGAA
CTGTCCTTCATATATACATTGTTTGTGGTAATAGACCCCTGAGCTGGTAG
GTTTTCATAAATA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGACCACTGGTGTGCTCAGG
TTTCATAAAGCGTATACAGTGTTCATTCCCTTTGCTTGTAAAAGGGACTC
AGAGGGAGCTAGATGACATTCACCTTGGCGAAAGTTGTTGATGGATTCAG
ACAAAACCTCTAAAGGATCCTTTTCTGAATTACTCCTATCCTGGAAAACA
CAGGATTTACGAAAGACTGAACCCTTAGATATAATTATCAGGGAATATAA
TTACAAGAGACAAGATCTACAGACTTGCTAATGCAGTTCCCTTCGTTTTC
TGGATGATACAGTGAGTAGCCTCAAGGTCACACAGCCTTATTTGTGTCCT
TTCCACCAAACTACAGTCCCTCATTGCAACAAATGACAAGAAGGACAATG
ACCTTCAGTCATTGCTCCTGGACCTACTAGAACAGAGCTGCCCCCTCCCT
GACCTTGGAGTGCAGAATGCCCTAGTAAGCAAGCAACTCTATGGAGGGTG
GGAGCAATCTTTCCCTGAGATTTGGAGCATATAGCAACAGCACACGGGGA
GCCTGGACTGACCCCTCCAAGAATCCACCGGCTGCCTTGTCCCAGGTGGG
GACATATAGTTCATCTATCATGCTCCTGCTTCGGAAGAATGAGTCACCAT
CACCTGAGGCCATTGAAAAGTCCTGAGAGAGCAAACACTGGAAGAAACTC
TTTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_o16.b1 MSMg01no487_o16.b1 CHROMAT_FILE:
MSMg01no487_o16.b1 PHD_FILE: MSMg01no487_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:40 2005
         (691 letters)



>mm_chr14_105265948_105267038
          Length = 1091

 Score = 1328 bits (687), Expect = 0.0
 Identities = 690/691 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagggacacatgagctaaactctgtgtataacgaatactgtagagattctgatttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ttgagggacacatgagctaaactctgtgtataacgaatactgtagagattctgatttccc 653

                                                                       
Query: 61  aggagcccagggattaacacgaagttctccatctgcagaatttgcaggtgacatgacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aggagcccagggattaacacgaagttctccatctgcagaatttgcaggtgacatgacttc 593

                                                                       
Query: 121 tcagagacggtgggtgagcactcctgagcagacacagccagggtaggtcgaagaggagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcagagacggtgggtgagcactcctgagcagacacagccagggtaggtcgaagaggagca 533

                                                                       
Query: 181 tattggatagcttgctctccaccctcctccagttccacacactcttcctctttgtaaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tattggatagcttgctctccaccctcctccagttccacacactcttcctctttgtaaatg 473

                                                                       
Query: 241 gaagctgactttggggtagaagtaaggcaagcttttcctgagaattgaaccaaccaagag 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaagttgactttggggtagaagtaaggcaagcttttcctgagaattgaaccaaccaagag 413

                                                                       
Query: 301 aaatataagttcacatttctttggcccaaaggcctgtctcccttcaacgcttgtatgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aaatataagttcacatttctttggcccaaaggcctgtctcccttcaacgcttgtatgcag 353

                                                                       
Query: 361 aatctctaacttctaaattaaaaacattaataggtggagtattttggaagtcactcaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aatctctaacttctaaattaaaaacattaataggtggagtattttggaagtcactcaatc 293

                                                                       
Query: 421 acagaacaaactacaggacaaataataatgaaactagttttgttttgttttttctttata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 acagaacaaactacaggacaaataataatgaaactagttttgttttgttttttctttata 233

                                                                       
Query: 481 tccaggttctaatgaaagacagccatccagaaaccagacaccagacctaccagaaccttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tccaggttctaatgaaagacagccatccagaaaccagacaccagacctaccagaaccttg 173

                                                                       
Query: 541 ctcttggaccagaaatgtgaagaataaacttgcttgtaagtcactccatctatggttatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ctcttggaccagaaatgtgaagaataaacttgcttgtaagtcactccatctatggttatt 113

                                                                       
Query: 601 ttgttatagcccccaaacagactaagaactgtccttcatatatacattgtttgtggtaat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ttgttatagcccccaaacagactaagaactgtccttcatatatacattgtttgtggtaat 53

                                          
Query: 661 agacccctgagctggtaggttttcataaata 691
           |||||||||||||||||||||||||||||||
Sbjct: 52  agacccctgagctggtaggttttcataaata 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_o16.g1 MSMg01no487_o16.g1 CHROMAT_FILE:
MSMg01no487_o16.g1 PHD_FILE: MSMg01no487_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:40 2005
         (668 letters)



>mm_chr14_105098222_105099289
          Length = 1068

 Score = 1253 bits (648), Expect = 0.0
 Identities = 663/668 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttagaccactggtgtgctcaggtttcataaagcgtatacagtgttcattccctttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttagaccactggtgtgctcaggtttcataaagcgtatacagtgttcattccctttgct 260

                                                                       
Query: 61  tgtaaaagggactcagagggagctagatgacattcaccttggcgaaagttgttgatggat 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tgtaaaagggactcagagggagctagatgacattcaccttggcgaaagctgttgatggat 320

                                                                       
Query: 121 tcagacaaaacctctaaaggatccttttctgaattactcctatcctggaaaacacaggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagacaaaacctctaaaggatccttttctgaattactcctatcctggaaaacacaggat 380

                                                                       
Query: 181 ttacgaaagactgaacccttagatataattatcagggaatataattacaagagacaagat 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 ttacgaaagactgaacccttcgatataattatcagggaatataattacaagagacaaaat 440

                                                                       
Query: 241 ctacagacttgctaatgcagttcccttcgttttctggatgatacagtgagtagcctcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctacagacttgctaatgcagttcccttcgttttctggatgatacagtgagtagcctcaag 500

                                                                       
Query: 301 gtcacacagccttatttgtgtcctttccaccaaactacagtccctcattgcaacaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcacacagccttatttgtgtcctttccaccaaactacagtccctcattgcaacaaatga 560

                                                                       
Query: 361 caagaaggacaatgaccttcagtcattgctcctggacctactagaacagagctgccccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagaaggacaatgaccttcagtcattgctcctggacctactagaacagagctgccccct 620

                                                                       
Query: 421 ccctgaccttggagtgcagaatgccctagtaagcaagcaactctatggagggtgggagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctgaccttggagtgcagaatgccctagtaagcaagcaactctatggagggtgggagca 680

                                                                       
Query: 481 atctttccctgagatttggagcatatagcaacagcacacggggagcctggactgacccct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctttccctgagatttggagcatatagcaacagcacacggggagcctggactgacccct 740

                                                                       
Query: 541 ccaagaatccaccggctgccttgtcccaggtggggacatatagttcatctatcatgctcc 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaagaatccaccggctgccttttcccaggtggggacatatagttcatctatcatgctcc 800

                                                                       
Query: 601 tgcttcggaagaatgagtcaccatcacctgaggccattgaaaagtcctgagagagcaaac 660
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 801 tgcttcggaagaatgagtcaccatcacctaaggccattgaaaagtcctgagagagcaaac 860

                   
Query: 661 actggaag 668
           ||||||||
Sbjct: 861 actggaag 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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