Query= MSMg01no488_b01.b1 MSMg01no488_b01.b1 CHROMAT_FILE:
MSMg01no488_b01.b1 PHD_FILE: MSMg01no488_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:52 2005
(659 letters)
>mm_chr14_40851088_40852149
Length = 1062
Score = 1199 bits (620), Expect = 0.0
Identities = 648/658 (98%), Gaps = 3/658 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaaagcaagagagagacagaaagaaagtcagagaggtgaataaagccaaaaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaaaagcaagagagagacagaaagaaagtcagagaggtgaataaagccaaaaga 264
Query: 65 attattccttgaaccaatccatgtccctgtcttctacctctaacaagtccacatgaaaca 124
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 attattccttgaaccaatccatgtccctgtcttaaacctctaacaagtccacatgaaaca 324
Query: 125 aagctaatgattgaataaaatgacagagaaatatttcatcaattctaggtacatgactac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagctaatgattgaataaaatgacagagaaatatttcatcaattctaggtacatgactac 384
Query: 185 agagtgatgagacaataagagaagacgctattgtcaattcactttaaagacaaacttaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagtgatgagacaataagagaagacgctattgtcaattcactttaaagacaaacttaaa 444
Query: 245 aatggaaactcacactgaaaagcaaaaatcaaaacttgtaatatttgtgtgagacttagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatggaaactcacactgaaaagcaaaaatcaaaacttgtaatatttgtgtgagacttagc 504
Query: 305 cctgagaccactagatggctttatgaacaaatctgaataaagctttaaagaataaataat 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgagaccactagatggctttatgcacaaatctgaataaagctttaaagaataaataat 564
Query: 365 tgctatgcgtgcatgctctatcaatgaagaaagaaaccagtattgtattggggaaaacta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgctatgcgtgcatgctctatcaatgaagaaagaaaccagtattgtattggggaaaacta 624
Query: 425 taatgttagcgggaaatggatgcctaattcaaaaggtataatttgaaaac-attcatctc 483
|||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 taatgttatcaggaaatggatgcctaattcaaaaggtataatttgaaaactattcatctc 684
Query: 484 acccactaaatttaagtatatccaatagtatgtctaattgtaaaacctttatagacaagg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acccactaaatttaagtatatccaatagtatgtctaattgtaaaacctttatagacaagg 744
Query: 544 aaagacatttcaatgttaaaagagtcttaaagtgctaaattcacacaaataaaaagatga 603
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 aaagacatttcaatgttaaaagagtcttaaagtgctaaattcgcacaaataaaaagatga 804
Query: 604 ttattttgtcctcagcattgctcagggtacttttttttttttt--actatgtatcaat 659
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 805 ttattttgtcctcagcattgctcagggtactttttttttttttttaccatgtatcaat 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1062
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1052
Effective search space: 682748
Effective search space used: 682748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_b01.g1 MSMg01no488_b01.g1 CHROMAT_FILE:
MSMg01no488_b01.g1 PHD_FILE: MSMg01no488_b01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:52 2005
(637 letters)
>mm_chr14_40869675_40870711
Length = 1037
Score = 1224 bits (633), Expect = 0.0
Identities = 636/637 (99%)
Strand = Plus / Minus
Query: 1 agtctttctactgaattccaccttctagtctaccctttcttacagtcataggtttttgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 agtctttctactgaattccaccttctagtctaccctttcttacagtcataggtttttgct 776
Query: 61 gttgttgttgttgataagtatccatacaatacacaaaatattctctctatactgtatttt 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 775 gttgttgttgttgataagtatccatacaatacacaaaatattctctttatactgtatttt 716
Query: 121 ttattaaaatctttgaaaatattttcattttctattgccatatctcaggattttgtttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttattaaaatctttgaaaatattttcattttctattgccatatctcaggattttgtttct 656
Query: 181 tttgatgcaattgactgtttgagttttttgtttgtttgtttgctttcttatcaaatctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tttgatgcaattgactgtttgagttttttgtttgtttgtttgctttcttatcaaatctat 596
Query: 241 ttttattcttaggaagtcattcacttattaaatatttaaatatgttgcttaatattagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttttattcttaggaagtcattcacttattaaatatttaaatatgttgcttaatattagaa 536
Query: 301 gtctctggaactctgtctgaaataacaaatttaagcagcacatggttagtcaaaggggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gtctctggaactctgtctgaaataacaaatttaagcagcacatggttagtcaaaggggaa 476
Query: 361 aacatgcaaagattttctaaaaatttattttacaaattaactatgctttttataggaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aacatgcaaagattttctaaaaatttattttacaaattaactatgctttttataggaaag 416
Query: 421 cagaatatttagctctctgccatataaactaggtatttaaaatattttagtatgtctctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cagaatatttagctctctgccatataaactaggtatttaaaatattttagtatgtctctt 356
Query: 481 ttagatttaagctaatgttcttatggagacagtacatgtttctcattaaaattatattaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttagatttaagctaatgttcttatggagacagtacatgtttctcattaaaattatattaa 296
Query: 541 aatatacatgttcttgaaatattgtactagtgctatctttactttaacaatatgttaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aatatacatgttcttgaaatattgtactagtgctatctttactttaacaatatgttaaat 236
Query: 601 atcttcaatttccattgcttatcaagacagaaactaa 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 235 atcttcaatttccattgcttatcaagacagaaactaa 199
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
