Query= MSMg01no488_d14.b1 MSMg01no488_d14.b1 CHROMAT_FILE:
MSMg01no488_d14.b1 PHD_FILE: MSMg01no488_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:04 2005
(682 letters)
>mm_chr14_78704529_78705610
Length = 1082
Score = 980 bits (507), Expect = 0.0
Identities = 561/579 (96%), Gaps = 1/579 (0%)
Strand = Plus / Minus
Query: 104 ttgagatagcacttggagccaggtgattttcttctggaggatttaatgtcatcagaattc 163
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1082 ttgagatagcactcggagccaggtgattttcctctggaggatttaatgtcatcagaattc 1023
Query: 164 tggatccaagcatttgtcctctcttttccttcccccgccctcccctg-ccccgtcccttc 222
||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1022 tggatccaagcgtttgtcttctcttttccttcccccgccctcccctgcccccgtcccttc 963
Query: 223 ttctcctcctccatctcttccttcctagctagggtctcacgtagcccaggctgacctcaa 282
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 962 ttctcttcctccatctcttccttcctagctagggtctcatgtagcccaggctgacctcaa 903
Query: 283 atttgtcatatagccaaggatattatacctccaagatagtgtttcagatatgcatcacgg 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 902 atttgtcatatagccaaggatattatacctccaagatagtgtttcagatatgcatcacag 843
Query: 343 tgccccatttatgtggtatgatgcttgggactgaatgcacatacatagctttgtgtgtgt 402
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 842 tgccccatttatgtggtgtgatgcttgggactgaatgcacatacatagctttgtgtgtat 783
Query: 403 gttaggcaaacactgtaccaagtacactgactgtacctctagtgcccggttgctacaagg 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 782 gttaggcaaacactgtaccaagtacactgactgtacctctagtgcccggttgctgcaagg 723
Query: 463 attgagtctctcagagacttacttaaaataactttagtcattattctgaacccaggtctg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 attgagtctctcagagacttacttaaaataactttagtcattattctgaacccaggtctg 663
Query: 523 tcactacatttttaaaaggttgtctccgtcacaagggtagtattaggaaaatgtttgagt 582
|||||||||| ||||||||| ||||||||||| |||||||| |||||||||||||||| |
Sbjct: 662 tcactacattgttaaaaggtcgtctccgtcaccagggtagttttaggaaaatgtttgaat 603
Query: 583 attctgactgcatctcactgagtgtcgtatggcatccgcatttgacacctcaggggaccc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 attctgactgcatctcactgagtgtcgtatggcatccgcatttgacacctcaggggaccc 543
Query: 643 tagtcacctagagatacatccagaatcccttgctcatga 681
||||||| ||||||||||||||||||||||||| |||||
Sbjct: 542 tagtcacttagagatacatccagaatcccttgcccatga 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_d14.g1 MSMg01no488_d14.g1 CHROMAT_FILE:
MSMg01no488_d14.g1 PHD_FILE: MSMg01no488_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:04 2005
(633 letters)
>mm_chr14_78550957_78551989
Length = 1033
Score = 1027 bits (531), Expect = 0.0
Identities = 587/633 (92%), Gaps = 42/633 (6%)
Strand = Plus / Plus
Query: 1 ctgtatttccagtgacaacatccagagtggtattatttcatcaaaatagggtaatttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtatttccagtgacaacatccagagtggtattatttcatcaaaatagggtaatttctc 260
Query: 61 tagcactcagagttaatatactggcttagcacagggaaatcttgtctctgtgtctctgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagcactcagagttaatatactggcttagcacagggaaatcttgtctctgtgtctctgta 320
Query: 121 ggcttcagtcaataacattagaaggaattacactgagcatgctaggatgagcatgctagg 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttcagacaataacattagaaggaattacactgagcatgctaggatgagcatgctagg 380
Query: 181 atgagcatgctaggatgagcatgctaggatgagcatgctaggatgagcatgctaggatga 240
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgagcatgctaggatgagcatgctaggatgagcatgctaggatg--------------- 425
Query: 241 gcattttttgatgagcatgctaggatggcccaggcctataacttgggaggcagaggccag 300
|||||||||||||||||||||||||||||||||
Sbjct: 426 ---------------------------gcccaggcctataacttgggaggcagaggccag 458
Query: 301 ggaatcccaagttcttgatctagactggtttctaataggaagttcaagaacaatccttgt 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 459 ggaatcccaagttcttgatctagactgggttctaataggaagttcaagaacaatccttgt 518
Query: 361 ctgaatagtgagactctgtctctgaaaaccaataatagtgataataactagtaaggttat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctgaatagtgagactctgtctctgaaaaccaataatagtgataataactagtaaggttat 578
Query: 421 tatgatcatttccatttttatcattcagttatcactatggttgagcacctcagctctatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tatgatcatttccatttttatcattcagttatcactatggttgagcacctcagctctatg 638
Query: 481 aaactttttagagagtattggagctattcaggagatagaagtcagataaaatagatttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aaactttttagagagtattggagctattcaggagatagaagtcagataaaatagatttta 698
Query: 541 aatcacaagcttaggaaagatgttccaacctttggtgtgctgctgcattgctgaggttgc 600
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 699 aatcacaagcttaggaaagatgttccaacctttggtgcgctgctgcattgctgaggtggc 758
Query: 601 aaatggtgcagcttgatatcagacacagctgac 633
|||||||||||||||||||||||||||||||||
Sbjct: 759 aaatggtgcagcttgatatcagacacagctgac 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
