NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATGACAAAAATATTTCGACAAGCATTACAATAACCATTTTATACA
GTTTATTGCTATTAATATTTTAAGTCCATACTTACAAGTATTAGCTCTAC
ACATGTATGATTCTTCACTTGCTAATTCACATTGTGTTTGTGTGTGTATA
TCTATTGAGTTATTCTTTCTTTTTTGTATAGAGAAAGGTTTTTTTTTTTT
TTTTTCATAGCTCTTACCTTAGGTAGACTTTTAGGACTTAGCTGGCTGAT
GGATATGTAGTTTGACTTTGTGATATAAATAGACTATACTTATAGTCTGT
GGCCCAAATTTTGTGGTTTAAGTACACTAACATAAAATATCACAATCATC
CAGCATTGTAATAAAATATTAGGCCAATAATAAGGTTTCATTAATATTTA
ACAGAAAATAGTTAATGATGTGAGGTTTTATTGTCTTTTGGTTTATGGAT
TAATGTGAGCATAAAGATGATTTCAATTTCATAAAATAACAAGGATGGAA
ACTGACTGAAATGATAATTTGCAATTATATAGGCACAAAGTGTGATAGAT
ATGCCAGGACTTCACAACAGTAGCACATGGGTTCTGACATAGTTTCTTAA
ATTAAACAAATCCAGATGTGCTAGACAGTATTTAGTATACATGTGTGCTC
ATGTGCTCATGTACATGCACATACTTTCTTATCCAAAANAANNNTTTTNA
CATACACACACACACTCAACACACAC

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGAATTACTGAATGGCTG
AGAAGCAACTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAA
ATCAAAACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATACAGGTGACAGCAGATGTTGGCTAGGATGAGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGAGATTGCAAGCTTGTACAACCACTCTGGAAA
TTAGTCTGGCGATTCCTCTTTTTTTTGGACATAGTACTACTGGAGGATCC
CGCAATACCTCTCCTGGGCATATATCCAGGAGATGTTCCAACTGGCAAGA
AGGACACATGCTCCACTATTTTCATAGCAGCCTTCTTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATTTACAGAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTCAGT
GAGGTAACCCAATCACAAAGGAACTCATATGATATGTACTCACTGATAAG
TGGATATTAGCCCAGAGACTTAGTATAGCGAGATATAAGGTACAATATGC
AAAACACATGAAACTGAAGAAGAACGAAGACCAAAGTGTGGACACTTTGC
T

Query= MSMg01no489_j21.b1 MSMg01no489_j21.b1 CHROMAT_FILE:
MSMg01no489_j21.b1 PHD_FILE: MSMg01no489_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:55 2005
         (542 letters)



>mm_chr14_97262329_97263269
          Length = 941

 Score =  992 bits (513), Expect = 0.0
 Identities = 531/537 (98%), Gaps = 1/537 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aatgacaaaaatatttcgacaagcattacaataaccattttatacagtttattgctatta 65
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgacaaaaatataaagacaagcattacaataaccattttatacagtttattgctatta 682

                                                                       
Query: 66  atattttaagtccatacttacaagtattagctctacacatgtatgattcttcacttgcta 125
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 681 atattttaagtccatacttacaagtattagctctacacatgtatgtttcttcacttgcta 622

                                                                       
Query: 126 attcacattgtgtttgtgtgtgtatatctattgagttattctttcttttttgtatagaga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcacattgtgtttgtgtgtgtatatctattgagttattctttcttttttgtatagaga 562

                                                                       
Query: 186 aaggtttttttttttttttttcatagctcttaccttaggtagacttttaggacttagctg 245
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aa-gtttttttttttttttttcatagctcttaccttaggtagacttttaggacttagctg 503

                                                                       
Query: 246 gctgatggatatgtagtttgactttgtgatataaatagactatacttatagtctgtggcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctgatggatatgtagtttgactttgtgatataaatagactatacttatagtctgtggcc 443

                                                                       
Query: 306 caaattttgtggtttaagtacactaacataaaatatcacaatcatccagcattgtaataa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caaattttgtggtttaagtacactaacataaaatatcacaatcatccagcattgtaataa 383

                                                                       
Query: 366 aatattaggccaataataaggtttcattaatatttaacagaaaatagttaatgatgtgag 425
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aatattaggtcaataataaggtttcattaatatttaacagaaaatagttaatgatgtgag 323

                                                                       
Query: 426 gttttattgtcttttggtttatggattaatgtgagcataaagatgatttcaatttcataa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttttattgtcttttggtttatggattaatgtgagcataaagatgatttcaatttcataa 263

                                                                    
Query: 486 aataacaaggatggaaactgactgaaatgataatttgcaattatataggcacaaagt 542
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aataacaaggatggaaactgactgaaatgataatttgcaattatataggcacaaagt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space:   495292
Effective search space used:   495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)