NNNTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTATGTACGGAATTCTCTTCATCATGCAATCCATTAGCGCCT
GCTCTGGTCCTGAGCCTTGAAATATGGCTAGGCAAACTTTTTAAACTAAT
AGGGTGGATTTTCCAAGCCAAACATGGTATGCCTACAGTGAATGCTTAAT
TGCAGGTCTGTCAGTGCAGAGTCTCACCCGATCAACTATGCTGTCTTATG
TACTAAGACTAGAGAAAATATGGTTAGCTTGTAACAATCAGGTGATTAAG
CCAGGTATAGTGGCTCACACTTTTAAGCCCAATACTTAGAAGCCTTAGAA
TATAGGCTTGACATGAATGTCAGGCAAACGTAGGCTACAGAGTGAAACCC
TGTCTCAAAACATTCCAAAACAACCAAGGAATTAGGTGAGCAAAATGGTT
ATAATTGTAAGGAAAATGATAATAAACTGATTCTGAGTCACTGGATGTAC
TTCCAACACAACCCAGCATCTCTAAGCTTAGAAACTTAGCCTGCCTCTTT
CTAGAGTCTTCTATGTCTCATCCACTCACCCACCATTTACTTATGTACCT
TCTGTGGACCTACAAAGCCCAAGGTCCTCACATAACAATGTGACCCCTGA
GAATTCTCACTATATATATTTTTTTTTCAATACGGTGCTGTCATTTAGAT
TCAGAGGGAAAAAAATAGAATGGAGTCAGTTGTTGGGGGAGGGGCCCATA
AATATAAGAATAGGTATT

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCCAGAAAAATTCTCCCTTATTGTCAGGGATGCCTGA
AACAGTAGACAGACTAAACTCAAACTCCGTGCTGTTTTTATCCTGTATGA
TTAAGCACACATTTAATACTTTTCCACCTTAAATGTTTATCACTCATGCA
ACCATATGTTTGCAGTTTGATATCCATCAGCAAAACTCATAATTTTTTCC
TTATTATAGATGTTAGTGAGCTCAGCATGTGAATTTTTCATTATTAATCA
AGAATGTACCTGGTTCTTTTTTAAGGAAGTACTATATGACTTATTTTTTT
TCACATTTGAGTTGCCAGTATCTTGATTTTGGGTGCTTTTCCTAATGCAA
ATGATGGTTTCTTGAAAAGCAGCAATGCAATGAAGTAGCAGTTGACCTGA
TAATTGGATGGCTGGTAAAAGACTGAGTAGGTAGCACATGAACTATAGAC
ACATGGGTTGAAGGTATGACTCAACTTACTATCTAGAACAGCATGCAATT
TAAAACCCATAAACTGTTTATTGCTGAAAATTTCCATTTAGTATTTTGCA
TTCTGGGGAACTGAAACCACACATACATACACACACTCTCAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAAGGAGGAGGAGGAAAATGAGAANGTTT
TTTTTTTTTTTTTTNTNTTTNTTTTTTTTTTTTTTNTTTTTTTA

Query= MSMg01no489_m13.b1 MSMg01no489_m13.b1 CHROMAT_FILE:
MSMg01no489_m13.b1 PHD_FILE: MSMg01no489_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:09 2005
         (606 letters)



>mm_chr14_80416973_80417979
          Length = 1007

 Score =  804 bits (416), Expect = 0.0
 Identities = 443/452 (98%), Gaps = 1/452 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctatg-tacggaattctcttcatcatgcaatccattagcgcctgctctggtcc 63
           ||||||||||||  | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaattctctatgcaaaggtattctcttcatcatgcaatccattagcgcctgctctggtcc 393

                                                                       
Query: 64  tgagccttgaaatatggctaggcaaactttttaaactaatagggtggattttccaagcca 123
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 392 tgagccttgaaatgtggctaggcaaactttttaaactaatagagtggattttccaagcca 333

                                                                       
Query: 124 aacatggtatgcctacagtgaatgcttaattgcaggtctgtcagtgcagagtctcacccg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aacatggtatgcctacagtgaatgcttaattgcaggtctgtcagtgcagagtctcacccg 273

                                                                       
Query: 184 atcaactatgctgtcttatgtactaagactagagaaaatatggttagcttgtaacaatca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 atcaactatgctgtcttatgtactaagactagagaaaatatggttagcttgtaacaatca 213

                                                                       
Query: 244 ggtgattaagccaggtatagtggctcacacttttaagcccaatacttagaagccttagaa 303
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 212 ggtgattaagccaggtatagtggctcacacttttaagccccatacttagaagccttagaa 153

                                                                       
Query: 304 tataggcttgacatgaatgtcaggcaaacgtaggctacagagtgaaaccctgtctcaaaa 363
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 152 tataggcttgacatgaatgtcaggcaaacctaggctacagagtgaaaccctgtctcaaaa 93

                                                                       
Query: 364 cattccaaaacaaccaaggaattaggtgagcaaaatggttataattgtaaggaaaatgat 423
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  catttcaaaacaaccaaggaattaggtgagcaaaatggttataattgtaaggaaaatgat 33

                                           
Query: 424 aataaactgattctgagtcactggatgtactt 455
           ||||||||||||||||||||||||||||||||
Sbjct: 32  aataaactgattctgagtcactggatgtactt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1007
Length adjustment: 10
Effective length of query: 596
Effective length of database: 997
Effective search space:   594212
Effective search space used:   594212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)