Query= MSMg01no490_k17.b1 MSMg01no490_k17.b1 CHROMAT_FILE:
MSMg01no490_k17.b1 PHD_FILE: MSMg01no490_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:19 2005
(244 letters)
>mm_chr14_21832890_21833533
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Plus
Query: 1 acctcgaactccgagatctgcctgcttctgcctcccaagagctgggattaatggcatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctcgaactccgagatctgcctgcttctgcctcccaagagctgggattaatggcatgtg 260
Query: 61 tcaaccaacactgcctggctaggaagctgaatcaaaacaaaagatcagaatgagtcaagg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaaccaacactgcttggctaggaagctgaatcaaaacaaaagatcagaatgagtcaagg 320
Query: 121 gacctcaggtggtggatgtagaacattggaacgagagtggagcttgctatcaaactacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacctcaggtggtggatgtagaacattggaacgagagtggagcttgctatcaaactacaa 380
Query: 181 aacctttacagattgtctgacttgagtcagagttagacaccaagtatggaagtggcactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacctttacagattgtctgacttgagtcagagttagacaccaagtatggaagtggcactc 440
Query: 241 tcaa 244
||||
Sbjct: 441 tcaa 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no490_k17.g1 MSMg01no490_k17.g1 CHROMAT_FILE:
MSMg01no490_k17.g1 PHD_FILE: MSMg01no490_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:19 2005
(625 letters)
>mm_chr14_21967839_21968864
Length = 1026
Score = 1019 bits (527), Expect = 0.0
Identities = 595/645 (92%), Gaps = 46/645 (7%)
Strand = Plus / Minus
Query: 1 tttatgccccaccatgggtacactgtgcctgcttcttttggagaagacatgagctcagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 tttatgccccaccatgggtacactgtgcctgcttcttttggagaagacat---------- 872
Query: 61 ccccaaatccatgtcaggcagctcatcccctcccgagcctag------------------ 102
|||||||||||||||||||||||||||
Sbjct: 871 ---------------aggcagctcatcccctcccgagcctagctccagaagattgaaaca 827
Query: 103 ctcttctggctctaggacacactggacacataaccacacaaagagacacacatactaatg 162
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 826 ctcttctggctctaggacacactggacacataaccacacaaagagacacacacactaatg 767
Query: 163 tttaaattaaaaaataaaatctaagaaag-aaaaaaaaataggaggggaggcagtcatcc 221
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 766 tttaaattaaaaaataaaatctaagaaagaaaaaaaaaataggaggggaggcagtcatcc 707
Query: 222 agaaaatatcaatgtctgacatattgtatttctaaatcagataaattttaaatgcaaact 281
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 706 agaaaatatcaatgtctgacataatgtatttctaaatcagataaattttaaatgcaaact 647
Query: 282 gtttttatttaaattttatacaaaatagattcatataacacatgaatttacttttatagt 341
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtttttatttaaattttataaaaaatagattcatataacacatgaatttacttttatagt 587
Query: 342 tttgttttccactgagtcagtaattcatttgtcatttacatacataacttagttaataag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tttgttttccactgagtcagtaattcatttgtcatttacatacataacttagttaataag 527
Query: 402 acatagtgcccacctggttctcctatttctcgtttctttatttcttgttcttctggccta 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 acatagtgcccacctggttctcctatttctcgtttctttatttcttgttcttctggccta 467
Query: 462 atctttaaatgtagatttccttgacccctagcttgtctcttctcacctagatctattttg 521
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 acctttaaatgtagatttccttgacccctagcttgtctcttctcacctagatctattttg 407
Query: 522 aatgactgtatccacacactcccatgtacaactccagcagtacttacactgaggtttagg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aatgactgtatccacacactcccatgtacaactccagcagtacttacactgaggtttagg 347
Query: 582 ataaagggtgaccta-acctgaaacctcacctctttgatacccag 625
||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 346 ataaagggtgacctacac-tgaaacctcacctctttgatacccag 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
