BAC Information

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BAC

Clone NameMSMg01-490M18
Chromosome14 (Build37)
Map Location 58,812,281 - 58,812,707
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
Downstream geneEG668177, EG668182, 1700129C05Rik, EG380907
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490M18.T7 (MSMg01no490_m18.b1)MSMg01-490M18.TJ (MSMg01no490_m18.g1)
ACCAG568942AG568943
length774764
length of high quality
(start - end)
618 (72 - 689)431 (327 - 757)
definitionCHROMAT_FILE: MSMg01no490_m18.b1 PHD_FILE: MSMg01no490_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:29 2005CHROMAT_FILE: MSMg01no490_m18.g1 PHD_FILE: MSMg01no490_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCG
GAATTCTTCCATTTACGGAATATGGGTTGTTTCTAGCTTCCTGCCCTTAT
GAATGAGGCTGCTATGAACACTGTCTAATTCATTCTGTGAAGCCATAGTT
ACTCTGAAACCTAAACCACACAAAGACCCAACAAATAAAGACAACTTTAG
ACCAATTTCACTTAAGCATATCAATATAAAAATACTCAACAAAATTTTCA
TAAACCAAATCCAAGAATACATCAAAAACTTCTCACCACAATCAAGGAGA
TTTCATCCCAGGGATGCAGGATGGTTCAATATACAAAAGTCCGTCAAAAA
ATTTTACTATATAAACAAACTGAAAGAAGAAATTTATATGATCATCTCAT
TAGATTCTGGAAAAGCCTTTGACAAAATACAACACCCCTTCAATGTTAAA
AGTCTTGGAGATATCAGGAATTCAAGGCCCATACCTAAACATAGTAAAAG
AAATAAACAACAAACCAACAGCCAACATCAAATTAAATAGAGAGAAACTT
GAAGCAATCTCACTAAAATAAAGGACAAGAGAAAGCTGCCCATCCTCTCC
CTATCTATTCAATACAGTACTCAAAGTTCTAGCCAGAGCAATTAGACAAC
AAAAGTAGATCAAGGGGATATAAATTGGACAGGAAGAAGTCAAGGTATTG
CTGAATGACATGATAGTATACATAAGCAACCCCAAAAATTCTACCAGAGA
ACTCCTATAGCTGATANNACACTT
ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCAGTGCTTATGTGAGACAGTGGGA
GAGTCCAGGGAGAAGAGTCGACTGTTCAGACTCTTCTCTGATTTCTGAGA
CTCCCCTTACCCCTGTTTTGACTTTGACTAGTGAACAGCTCTCCTCAGTT
GTCAAGGGTAAGGCTGCTTCTCCAACATGAAGATGTGATGCTGAAAAGCC
ATGCCTAGGTTTTGAAAAGAATGTTATAATAAAAAGCTGGACAAATAGCT
TCTGAGCAAATCTGAGCACATTTTTCTGCTCGGCTTTGATAATTTCCTTT
TTCCATTTAGCTTTGACCTTGGAAGAGACATGATTTATATAAAAAGAGAT
GTCCCGAGGGCAGAAACTATGTCATCTGTGCTCTGGGCTTGTCACCTTCA
GTTTTAAGATATCACTCATATAATGTTTCTATTAAATTTAAAAGTTTATG
TATTCAATTAGGTGATTTATAGGATTAGTTTTTAGAATGTTTCTAGGGTA
TAGACTTGCTATATTATGTTTTTTTTTGTTATCCTTTAAATATTAATTAC
ACCCCCCCCTTGAAATGAGCCTTTTAAACAAGGTTAAAGCAATAAAGTAT
GCTGAGAGTAGTGATAAGAGGCAGAGATCTATGGCCACATCCCTCTCCCT
CCCTGTCACTAGGTTTTTTTCCTCAGGGACAAGTGCTTTTCATTGTCTTA
GCTGGNTCTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_m18.g1 MSMg01no490_m18.g1 CHROMAT_FILE:
MSMg01no490_m18.g1 PHD_FILE: MSMg01no490_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:29 2005
         (431 letters)



>mm_chr14_58812081_58812909
          Length = 829

 Score =  775 bits (401), Expect = 0.0
 Identities = 422/429 (98%), Gaps = 2/429 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctcggctttgataatttcctttttccatttagctttgaccttggaagagacatgattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctcggctttgataatttcctttttccatttagctttgaccttggaagagacatgattt 260

                                                                       
Query: 61  atataaaaagagatgtcccgagggcagaaactatgtcatctgtgctctgggcttgtcacc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 atataaaaagagatgtcccgagggcagaaactatgtcatccgtgctctgggcttgtcacc 320

                                                                       
Query: 121 ttcagttttaagatatcactcatataatgtttctattaaatttaaaagtttatgtattca 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcggttttaagatatcactcatataatgtttctattaaatttaaaagtttatgtattca 380

                                                                       
Query: 181 attaggtgatttataggattagtttttagaatgtttctagggtatagacttgctatatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attaggtgatttataggattagtttttagaatgtttctagggtatagacttgctatatta 440

                                                                       
Query: 241 tgtttttttttgttatcctttaaatattaattacaccccccccttgaaatgagcctttta 300
           || ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 tggttttttt-gttatcctttaaatattaattacaccccccc-ttgaaatgagcctttta 498

                                                                       
Query: 301 aacaaggttaaagcaataaagtatgctgagagtagtgataagaggcagagatctatggcc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 499 aacaaggttaaagcaataaagtatgctgagagtagtgataagaagcagagatctatggcc 558

                                                                       
Query: 361 acatccctctccctccctgtcactaggtttttttcctcagggacaagtgcttttcattgt 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acatccctctcccttcctgtcactaggtttttttcctcagggacaagtgcttttcattgt 618

                    
Query: 421 cttagctgg 429
           |||||||||
Sbjct: 619 cttagctgg 627


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 829
Length adjustment: 9
Effective length of query: 422
Effective length of database: 820
Effective search space:   346040
Effective search space used:   346040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)