BAC Information

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BAC

Clone NameMSMg01-491B11
Chromosome14 (Build37)
Map Location 112,579,770 - 112,580,245
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk5, LOC100043501
Downstream geneEG223186, LOC100043509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491B11.T7 (MSMg01no491_b11.b1)MSMg01-491B11.TJ (MSMg01no491_b11.g1)
ACCAG569167AG569168
length720756
length of high quality
(start - end)
476 (62 - 537)653 (64 - 716)
definitionCHROMAT_FILE: MSMg01no491_b11.b1 PHD_FILE: MSMg01no491_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:53 2005CHROMAT_FILE: MSMg01no491_b11.g1 PHD_FILE: MSMg01no491_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCTGCAAACGACTCACTTCTTCAGAGGATCCGCGGAATTCTAAAG
CCTCTCCGCCCACCCTTGAGACATACTTCCTCCAACAAGCTCATACTTAC
TGATCCTTCTACTCCTATTAAGGAGTTCTCTTCTCTGGTGATTAAGCATT
CATTACAACTGAGGCTATGGATGCTATTCTTATTTAAACTCCCTCACTAG
TTTTGAAGGCAAACTTTATTAAATTTAAATTTTCTTATAGCTTTATCATC
TAATTAACTTAAACAAAAATCTTATCTAGCAACGTGTTTCCATTAAAGAA
ATTCAATACTTATATTGTATTTCTCCCAAATACTGCATCGTTGTAAATTG
GTACAAAGGTTATAAAAAAAATTGCCATATATTTGCCCTACTTTAAGCCA
AATTCATAATTAAAATACTAAAGATTTCATCCAAAAATGTGCACACACTA
TTCACGTTCAGCTTGATGTCTTGATTTGCTTGTAGACTTGAAAGAAATGT
TCAAAGATTTCTTCAATGAGTTTCACTAGTTGCAACTTGAAACATCTTCA
TAGTTGGTCCCTCATCTGATTTTTTTAAAGTATTTATAAGGAATATACAA
ATTTGAATATTAATTTGAATCAATTTTTGTGCCTATTGATAGGCTTACCT
TTCTAGCAGGAAATAGAAAAAAATATGATCCTGGAATCCTGGTAAGTAAA
TTTATCAACAGTGGTTGGAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCCCTGTACTGGGGCATATAACGTTTGCAATACCAAGG
GGGTCTCTCTTTCCAGTGAAGAGAGCTCTGGTACATATGCAGTTAGAGAT
ATGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTCCACCTATAGGG
TTGCAGATCCCTTCAGCTCCTTGGGTGCTTTCTCTAGCTTCTCCATGGGG
GCCCTGTGTTCCATCTTATAGATGACTGTGAGCATCCACTTCTGTATTTG
CCAGGCACTGACATAGCCTCATACAACACAGCTATAACAGGGTTCCTTCA
GCAAAATCTTGCTGGCATATGCAATAGTGTCTGGGTTTGGTGGCTGATTA
TGGATGGGATGGATCCCTGGGTGGGGTAGTCTCTGGATAGTCAATCCTTT
TGTCTTAGCTCCAAACTTTGTCTCTGTAATTCCATTCATGGGTATTTTGT
TCCCTATTCTAAGGAGGAACAAAGTGTCCACCAATTGGTCTTCCTTCTTC
TTGATTTTCTTGGGTTTTGAAAATTGTATCTTGGGTATTCTATGTTTCTG
GGCTAATATCCACTTATCAATGAGTGAATATCTAATGTTCTTTTATGGTT
GGGTTACCTCACTAAGGAAGATATCTTCCAGATACATCCATTTGTCCAAG
AATTTCATAAATCCATTGTTTTTAATAGCTGAGTAGTACTCCATTGTGTA
AATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_b11.b1 MSMg01no491_b11.b1 CHROMAT_FILE:
MSMg01no491_b11.b1 PHD_FILE: MSMg01no491_b11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:53 2005
         (476 letters)



>mm_chr14_112579435_112580310
          Length = 876

 Score =  843 bits (436), Expect = 0.0
 Identities = 466/476 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccttgagacatacttcctccaacaagctcatacttactgatccttctactcctattaa 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 811 acccttgagacatacttcctccaacaaggtcatacttactgatccttctactcctattaa 752

                                                                       
Query: 61  ggagttctcttctctggtgattaagcattcattacaactgaggctatggatgctattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ggagttctcttctctggtgattaagcattcattacaactgaggctatggatgctattctt 692

                                                                       
Query: 121 atttaaactccctcactagttttgaaggcaaactttattaaatttaaattttcttatagc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 691 atttaaactccctcactagttttgaaggcaaattttattaaatttaaattttcttatagc 632

                                                                       
Query: 181 tttatcatctaattaacttaaacaaaaatcttatctagcaacgtgtttccattaaagaaa 240
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tttatcatctaattaatttaaacaaaaatcttatctagcaacgtgtttccattaaagaaa 572

                                                                       
Query: 241 ttcaatacttatattgtatttctcccaaatactgcatcgttgtaaattggtacaaaggtt 300
           ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 571 ttcaatacttagattgtatttctcccaaatactgcatcggtctaaattggtacaaaggtt 512

                                                                       
Query: 301 ataaaaaaaattgccatatatttgccctactttaagccaaattcataattaaaatactaa 360
           || |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 511 atgaaaaaaattgccatatatttgccctactttaagccaaattcagaattaaaatattaa 452

                                                                       
Query: 361 agatttcatccaaaaatgtgcacacactattcacgttcagcttgatgtcttgatttgctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agatttcatccaaaaatgtgcacacactattcacgttcagcttgatgtcttgatttgctt 392

                                                                   
Query: 421 gtagacttgaaagaaatgttcaaagatttcttcaatgagtttcactagttgcaact 476
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 391 gtagacttgaaagaaatgttcaaagagttcttcaatgagtttcactagttgcaact 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)