BAC Information

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BAC

Clone NameMSMg01-491F05
Chromosome14 (Build37)
Map Location 84,025,958 - 84,026,647
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773
Downstream geneLOC100043279, LOC100043775, LOC100043776, LOC100043280, LOC100043285, Pcdh17, 9630013A20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491F05.T7 (MSMg01no491_f05.b1)MSMg01-491F05.TJ (MSMg01no491_f05.g1)
ACCAG569346AG569347
length754769
length of high quality
(start - end)
696 (28 - 723)591 (61 - 651)
definitionCHROMAT_FILE: MSMg01no491_f05.b1 PHD_FILE: MSMg01no491_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:12 2005CHROMAT_FILE: MSMg01no491_f05.g1 PHD_FILE: MSMg01no491_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCAATACGACTCACTATATTCAGAGGATCCGCGGAATTCATATATCTGTT
CTGCTATGAATTTAAACTTATATAAATATACAGCTGGGGGAAATTATAAA
ATATGTGTAAGCTTTATCTTCTCATTACACTAAATGGGATAAACAGTATA
TGTTTTAGAATTCGAGCAGTGTACCATTTATACAGAAGTTTTGCTCTAAG
ATTTTAAATTGTGACATCAGTTTTAAAACTCAGTGTATGTTGGTTGGATT
TTATCTATATGCTTTGTATGTAAGCAACCATATATTCTAATCACATAATT
TTATAGAAAATAGTACTTCTGCACTCAAAATACTATAGGTCTTCCTTTTG
TATACACTGAGTCAGTTATCCTTTCATTTCATTGTGGAGATAGCCTACCA
ATATAATAGACATACTTGTGAAATATTATAAAAACACTATCAATTTTATT
TTCTTCCATAATATTGTTTTTATGTTTTGAAAATGCACTTTTATCACAAT
ATCAACTTGGAAAGAAATCCATCATTTTACGTTCATGCATTATTTTTAAA
AATTGGAAGGTAAACTGAGTTTATTTCAATTGTATTTGATTTCACAGAGG
AATGAATGTAAATTTGTGAACTGTTAGATTCCAGTTAAAACTAGTTTATA
CAGATCTTCGTGATAAATACTTTTGTTTTAACTGCAATATTAGTCCAAAA
TGCTGGCAATTTTTACTTTTTTGTTGTTGTTGTTGTTTTGGTTTTTTGTT
TTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAGAATCACCTGAAAA
AATGTTCAGCATCCTTAATCATCAAGGAAATGCAAATCAAACCAACCCTG
AGATTCCACCTCACCCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGA
CAGCAGATGCTGGAGAGGATGTGGATAAGAGGAACACTCCTCTATTGTTT
GTGTGATTGCGAGCTTGTACAACCACTCTGGAAATTAGTCTGGTGGTTTC
TCAGAAACTTGGACATAGTACTACCAAAGGATCCTGTAATACCTCTGGGC
ATATATCCTGAAGATGTTCCAACTGGTAAGAAGGATACATGCTCCATTAA
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAAAT
GCCCCTCAACAGAAGAATGGATACAAACAATATGTTACCTTTACATGAAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAATTTCCTAGGCAAATG
GATGGACCTTTCCCCATTTTTAATAGGGATACTTGGTTCTCTGGAGTCTA
ACTCCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATAGGGTTTA
GGATTGTTAAATATCTTTTCCCAATCTGTTGGTTGTCATTTGTTCTTCTT
GACAGTGTCCTTTGCCTTACAGAAGCTTTGCNATTTTATGAGATCCCAAT
TGACAATTCTTGATCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_f05.b1 MSMg01no491_f05.b1 CHROMAT_FILE:
MSMg01no491_f05.b1 PHD_FILE: MSMg01no491_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:12 2005
         (696 letters)



>mm_chr14_84025752_84026848
          Length = 1097

 Score = 1199 bits (620), Expect = 0.0
 Identities = 673/692 (97%), Gaps = 5/692 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcatatatct--gttctgctatgaatttaaacttatataaatatacagctggggga 64
           ||||||||||||||  ||  ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 896 gaattcatatatctgagt--tgctatgaatttaaacttatataaatatatagctggggga 839

                                                                       
Query: 65  aattataaaatatgtgtaagctttatcttctcattacactaaatgggataaacagtatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aattataaaatatgtgtaagctttatcttctcattacactaaatgggataaacagtatat 779

                                                                       
Query: 125 gttttagaattcgagcagtgtaccatttatacagaagttttgctctaagattttaaattg 184
           | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 778 ggtttagaattcgagcagtgtaccatttatacacaagttttgctctaagattttaaattg 719

                                                                       
Query: 185 tgacatcagttttaaaactcagtgtatgttggttggattttatctatatgctttgtatgt 244
           || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 718 tgtcatcagttttaaaactcagtgtatgttggttggattttatctataagctttgtatgt 659

                                                                       
Query: 245 aagcaaccatatattctaatcacataattttatagaaaatagtacttctgcactcaaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aagcaaccatatattctaatcacataattttatagaaaatagtacttctgcactcaaaat 599

                                                                       
Query: 305 actataggtcttccttttgtatacactgagtcagttatcctttcatttcattgtggagat 364
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 598 actataggtcttccttttgtatacactgactcagttatcctttcatttcattgtggagat 539

                                                                       
Query: 365 agcctaccaatataatagacatacttgtgaaatattataaaaacactatcaattttattt 424
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aggctcccaatataatagacatacttgtgaaatattataaaaacactatcaattttattt 479

                                                                       
Query: 425 tcttccataatattgtttttatgttttgaaaatgcacttttatcacaatatcaacttgga 484
           |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 478 tcttccataacattgttttaatgttttgaaaatgcacttttatcacaatatcaacctgga 419

                                                                       
Query: 485 aagaaatccatcattttacgttcatgcattattttt-aaaaattggaaggtaaactgagt 543
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 418 aagaaatccatcattttacgttcatgcattatttttaaaaaattggaaggtaaactgagt 359

                                                                       
Query: 544 ttatttcaattgtatttgatttcacagaggaatgaatgtaaatttgtgaactgttagatt 603
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 358 ttatttcaattgtatttgatgtcacagaggaatgaatgtaaattagtgaactgttagatt 299

                                                                       
Query: 604 ccagttaaaactagtttatacagatcttcgtgataaatacttttgttttaactgcaatat 663
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 298 ccagttaaaactagtttatacagatctttgtgataaatacttttgttttaactgcaatat 239

                                           
Query: 664 tagtccaaaatgctggcaatttttactttttt 695
           ||||||||||||||||||||||||||||||||
Sbjct: 238 tagtccaaaatgctggcaatttttactttttt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1097
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1087
Effective search space:   745682
Effective search space used:   745682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)