BAC Information

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BAC

Clone NameMSMg01-492J03
Chromosome14 (Build37)
Map Location 21,933,356 - 22,107,483
singlet/doubletdoublet
Overlap geneAdk
Upstream geneKcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1
Downstream geneMyst4, EG435391, Dusp13, Samd8, Vdac2, Comtd1, Zfp503, 1700112E06Rik, EG665075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492J03.T7 (MSMg01no492_j03.b1)MSMg01-492J03.TJ (MSMg01no492_j03.g1)
ACCAG570295AG570296
length770693
length of high quality
(start - end)
249 (70 - 318)612 (80 - 691)
definitionCHROMAT_FILE: MSMg01no492_j03.b1 PHD_FILE: MSMg01no492_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:50 2005CHROMAT_FILE: MSMg01no492_j03.g1 PHD_FILE: MSMg01no492_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,933,356 - 21,933,595)(22,106,872 - 22,107,483)
sequence
NNGGACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCCCATACTTGACTATAATATTAACAGACTTGAAGAGAT
GGGTGTGGCTCAGCATGCCTACTTCACTTGTGAGACCAAGGCAGGAGGTG
ATATGTTAGAATAGTGGCTGGAGTTGGAACATAGCACACCAGGCCAAAAC
AGTTCCACGTGTAAGAGGGGCAAGGTGGCAGCAGAAAAGAGAAGGGGGGA
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGATTTTTGTTTTGNNNNCGNNNGGGNNGGGTGT
GGTTTTGGTGTTTTGTTTTGTTTTGGTGTTTTTTGGCGTGGCGTGGGGGT
TTGTTGTTGCGTGGNTTGTTTTTTTGGTGTCCCTCTTTTTCCCGCCTCGT
GTCGGTCGTTTTCCCCCTTTTGTGGTCTCCGCGGTCCTTGTCTGTGTTTC
TTCCCCNNCTCCCCTGTTCCTCGCTTTTTTTTTCGCTTTTGCTCCTTCCG
CTAGTTTCTTCGCCTCTTTCTTGTCTCGCTTCTCGTCTCCCCTTCTCTGT
TTTTCCCCATGTTGCTGTCTTCCTCCCTTTGCTGCCGCGCCTTTCTCTTG
TACTCTCTGGGCCCTCCCTTGGGCTCTTCTTTCTTTTTTATGTTTAAGCT
AAGCGCGCCCCGCCGTATTCGATCAGTTGGTTCTCTCTCTCTCGTACGGC
GATCCGTCGGCCCTTGTGTC
NNNCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTTTTCCCTCTGAGATGCT
AACTTCCCCCCATTGCCAGGGCCTTTTCAGACCCTAGTAGAAAACTAAGA
CCAAAGGTGTCATGTTCTTTTGCTAGAGGTATGCTGGGGAGTTAGGGACT
GTGAGCAGGGAGAAAGAAAATGAACTGTACTTGGCTGTTTAAGAATTGAA
ACAAAATAATTTTTTAAGCCATTAAGGTAGCTTGTTACACGTTTGCACTA
ATTGAAACCACAGAATGCGTTTATATGAGGTAGAAAAGGAACCCGGAGAG
TTTTAAAGTTTGAGGGTCTCAGCTGTGTGCATACCTCCTCTCAACGGCAC
AGGAAACCAGCTGCTTCCATTTAGGACTGTATTGAACACATGTGCTCCCG
TATACCCATGACATAACGCGGAACACTACACTTTCAGACAGGCTTGCCAA
GTGGGGGGAGGAGACACAAATATGTTAGTGGGACAGAAAACATTATAGAT
GTTTTTGTAAAACGCTAAGAAAAGAACCTTGTTTCCACTGGTGTGCTCCA
TAATCCATTATTTAGTAGATGAATAAGAAAATGAGTGAACTTGAAACCAA
CTTATTCATTATAAGTGCGGCTTAATTTTAAATCTAAATTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_j03.b1 MSMg01no492_j03.b1 CHROMAT_FILE:
MSMg01no492_j03.b1 PHD_FILE: MSMg01no492_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:50 2005
         (249 letters)



>mm_chr14_21933156_21933804
          Length = 649

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgactataatattaacagacttgaagagatgggtgtggctcagcatgcctacttcactt 60
           ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttgactataatgttaacagacttgaagagatgggtgtggctcagcatgcctagttcactt 260

                                                                       
Query: 61  gtgagaccaaggcaggaggtgatatgttagaatagtggctggagttggaacatagcacac 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gtgagaccaaggcaggaggtgatatgttagaatagtggctcgagttggaacatagcacac 320

                                                                       
Query: 121 caggccaaaacagttccacgtgtaagaggggcaaggtggcagcagaaaagagaagggggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggccaaaacagttccacgtgtaagaggggcaaggtggcagcagaaaagagaagggggg 380

                                                                       
Query: 181 aagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagagagagagagagagagagagagagagagagagagagagagagagagagagagaga 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no492_j03.g1 MSMg01no492_j03.g1 CHROMAT_FILE:
MSMg01no492_j03.g1 PHD_FILE: MSMg01no492_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:50 2005
         (612 letters)



>mm_chr14_22106672_22107683
          Length = 1012

 Score = 1183 bits (612), Expect = 0.0
 Identities = 612/612 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcttttccctctgagatgctaacttccccccattgccagggccttttcagaccctagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 agcttttccctctgagatgctaacttccccccattgccagggccttttcagaccctagta 753

                                                                       
Query: 61  gaaaactaagaccaaaggtgtcatgttcttttgctagaggtatgctggggagttagggac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gaaaactaagaccaaaggtgtcatgttcttttgctagaggtatgctggggagttagggac 693

                                                                       
Query: 121 tgtgagcagggagaaagaaaatgaactgtacttggctgtttaagaattgaaacaaaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tgtgagcagggagaaagaaaatgaactgtacttggctgtttaagaattgaaacaaaataa 633

                                                                       
Query: 181 ttttttaagccattaaggtagcttgttacacgtttgcactaattgaaaccacagaatgcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttttttaagccattaaggtagcttgttacacgtttgcactaattgaaaccacagaatgcg 573

                                                                       
Query: 241 tttatatgaggtagaaaaggaacccggagagttttaaagtttgagggtctcagctgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tttatatgaggtagaaaaggaacccggagagttttaaagtttgagggtctcagctgtgtg 513

                                                                       
Query: 301 catacctcctctcaacggcacaggaaaccagctgcttccatttaggactgtattgaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 catacctcctctcaacggcacaggaaaccagctgcttccatttaggactgtattgaacac 453

                                                                       
Query: 361 atgtgctcccgtatacccatgacataacgcggaacactacactttcagacaggcttgcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 atgtgctcccgtatacccatgacataacgcggaacactacactttcagacaggcttgcca 393

                                                                       
Query: 421 agtggggggaggagacacaaatatgttagtgggacagaaaacattatagatgtttttgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agtggggggaggagacacaaatatgttagtgggacagaaaacattatagatgtttttgta 333

                                                                       
Query: 481 aaacgctaagaaaagaaccttgtttccactggtgtgctccataatccattatttagtaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aaacgctaagaaaagaaccttgtttccactggtgtgctccataatccattatttagtaga 273

                                                                       
Query: 541 tgaataagaaaatgagtgaacttgaaaccaacttattcattataagtgcggcttaatttt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgaataagaaaatgagtgaacttgaaaccaacttattcattataagtgcggcttaatttt 213

                       
Query: 601 aaatctaaatta 612
           ||||||||||||
Sbjct: 212 aaatctaaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)