Query= MSMg01no492_j21.b1 MSMg01no492_j21.b1 CHROMAT_FILE:
MSMg01no492_j21.b1 PHD_FILE: MSMg01no492_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:53 2005
(515 letters)
>mm_chr14_28821426_28822340
Length = 915
Score = 833 bits (431), Expect = 0.0
Identities = 484/515 (93%), Gaps = 21/515 (4%)
Strand = Plus / Minus
Query: 1 aattcattctaccaagagtggtttgctatcagaaagcaagcctgttccttttccagtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 aattcattctaccaagagtggtttgctatcagaaagcaagcctgttccttttccagtcac 766
Query: 61 ctgtcactatgtgacgacacagggacacagggtcaaagcacccattataatgccacttgc 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ctgacactatgtgacgacacagggacacagggtcaaagcacccattataatgccacttgc 706
Query: 121 catgttgcgttgcagccattaggctgccacaagaagctgctgctgctgctgctgctgctg 180
||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 705 catgttgcgctgcagccattaggctgccacaagaagctgctgctg--------------- 661
Query: 181 ctgctactactgctgcagtgctgttaagcatccagaactaaaactattttccctgttgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ------ctactgctgcagtgctgttaagcatccagaactaaaactattttccctgttgta 607
Query: 241 cagaaggagccacccttggtattttgtagagtatcacaaaatagacaagtcacatcaagt 300
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 606 cagaaggagccacccttggtattttgtagagtaacacagaatagacaagtcacatcaagt 547
Query: 301 tatatgcgatgacattgacatgaaggtacttaaaatcccaatttcacccaattgcaaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tatatgcgatgacattgacatgaaggtacttaaaatcccaatttcacccaattgcaaatt 487
Query: 361 aaatggaaattttagaatctgaaaaggaaaaggcataatataaaataatgcaatattaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 486 aaatggaaattttagaatctgaaaaggaaaaggcataatataaaataatgcaacattgac 427
Query: 421 tgggtaaaaatgaagttcttccacagagtaatgcatgcatatgctatatatatgtatata 480
||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct: 426 tgggtaaaaatgaagttcttccacagagtaatgtatgcatatgctatatgtgtgtatata 367
Query: 481 tagcatactatattcatatatgtgtataaagtaca 515
|| ||||||||||||||||||||||||||||||||
Sbjct: 366 taacatactatattcatatatgtgtataaagtaca 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_j21.g1 MSMg01no492_j21.g1 CHROMAT_FILE:
MSMg01no492_j21.g1 PHD_FILE: MSMg01no492_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:53 2005
(569 letters)
>mm_chr14_28685360_28686328
Length = 969
Score = 986 bits (510), Expect = 0.0
Identities = 554/569 (97%)
Strand = Plus / Plus
Query: 1 acactttaaaattttcaatttcaattcgtgtagagatctttgacccagaaaagccttaag 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacttttaaattttcaatttcaattcgtgtagagatctttgacccagaaaagccttaag 260
Query: 61 ttgaagtgtacttaagctaaactttgtgctcctttttaccaggtggaaacatcaagttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagtgtacttaagctaaactttgtgctcctttttaccaggtggaaacatcaagttct 320
Query: 121 cccagggaaagccacttgctatttcagatgtttggtggtgcatcttgcagacagttagga 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 cccagggaaagccacttgctatttcagatgtttggcggtgcatcttgcagacagttagga 380
Query: 181 atagtttcaagcatcctggagggaactcatctactgtacagttggaaaaacttgggcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtttcaagcatcctggagggaactcatctactgtacagttggaaaaacttgggcatg 440
Query: 241 taatcacacactaaagtctctagcgatttccaagcagcaagcaactcaggattgataagg 300
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 441 taatcacacactaaagtctctagtgatttccaagcagcaagcagctcaggattgataagg 500
Query: 301 cgtttctttcccttgcagccattgtagaggctgaggcagagaagctggggtttctccagg 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 cgtttctttcccttgcagccattgtagaggctgaggcagagaagctggggcttctccagg 560
Query: 361 taaagtctgcagtcccaaggcttatcttcacaggagtgtgttgttaactcacactctcct 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagcctgcagtcccaaggcttatcttcacaggagtgtgttgttaactcacactctcct 620
Query: 421 ttgctgtagctgttcagaatcacttttcgacttttgattgaatcccgaaattcaatcaat 480
|||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 621 ttgctgtagctgttcagaatcattttttaacttttgattgaatttcgaaattcaatcaac 680
Query: 481 gttcaattcatgtttcagggactcaggcttctcttacactaangccgtgccatctttctg 540
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 681 gttcaattcatgtttcagggactcaggcttctcttacactaaggccttgccatctttctg 740
Query: 541 gccatatgagtcctttcgctctggattaa 569
||||||||||| |||||||||||||||||
Sbjct: 741 gccatatgagttctttcgctctggattaa 769
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
