BAC Information

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BAC

Clone NameMSMg01-492M05
Chromosome14 (Build37)
Map Location 81,594,612 - 81,594,838
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672828
Downstream geneLOC639207
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492M05.T7 (MSMg01no492_m05.b1)MSMg01-492M05.TJ (MSMg01no492_m05.g1)
ACCAG570441AG570442
length716746
length of high quality
(start - end)
626 (70 - 695)227 (84 - 310)
definitionCHROMAT_FILE: MSMg01no492_m05.b1 PHD_FILE: MSMg01no492_m05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:04 2005CHROMAT_FILE: MSMg01no492_m05.g1 PHD_FILE: MSMg01no492_m05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTCACCTTGACGAATACCGAATGGCAGAGAAGCACTTGAGAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAACTGGACATATTATTACCGGAGGATCCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACC
TAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAG
AAGAATGAAGACTGAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCAATAATTCACTGGTGGTCTGTATGTA
AAAGTAAGTATCTTCCTATTATGAAAAACACATCCAGTGCTACTTTGATT
GATCTATTTATATTTCCTACAATTAAATAATTTTAACATGTCAGCAAAAT
TCCTCCTTTTGTTTTTATATGAGAAAGACATACAGAAAGAGAGAAAAGAA
AGTAGAAAGGTATAAAGAAAGAACAAGACGGTCAGGACAAGACATGGATA
GAGGCAAAGTGGTACTTAAAGTGTATGTCTTTGAAGATATTTGGAAAGGC
TGTGTGCATGTGACACATTCAAAACTACTGTAAGCGCCCAAGACATGGTC
CGGACTTGAAGAGTAGAGGAGAGTTCTCCCAGAATTCCCGGGGAAACGAA
ATGTTGTCGTTTGTCGTGAAATGAACCGAACATGTTTATTTTTCGACAAA
ATGTTTTGCGATTTAACGTCTCGGTCTTTATCCTTAACTTTTGTAATTTT
TAACAAAAGATTTTTCATCTAAACGCTTTTTCTTCTCCTTATCTCTCCTA
TTATTTTTTCTCCTTTTTCCCCTCTTTCCTTTAACTTTTCCCTCCTCTCT
TTCATTGTTTCTCATTAACCTCTTCCTCTTCTATTATATAAAGCTTCTCC
TTCTACTCCTGTTTTCTTTTCCTTACCGCCTTCCCCTTTTATATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_m05.g1 MSMg01no492_m05.g1 CHROMAT_FILE:
MSMg01no492_m05.g1 PHD_FILE: MSMg01no492_m05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:04 2005
         (227 letters)



>mm_chr14_81594412_81595038
          Length = 627

 Score =  439 bits (227), Expect = e-128
 Identities = 227/227 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggtggtctgtatgtaaaagtaagtatcttcctattatgaaaaacacatccagtgctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggtggtctgtatgtaaaagtaagtatcttcctattatgaaaaacacatccagtgctac 260

                                                                       
Query: 61  tttgattgatctatttatatttcctacaattaaataattttaacatgtcagcaaaattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgattgatctatttatatttcctacaattaaataattttaacatgtcagcaaaattcc 320

                                                                       
Query: 121 tccttttgtttttatatgagaaagacatacagaaagagagaaaagaaagtagaaaggtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttttgtttttatatgagaaagacatacagaaagagagaaaagaaagtagaaaggtat 380

                                                          
Query: 181 aaagaaagaacaagacggtcaggacaagacatggatagaggcaaagt 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagaaagaacaagacggtcaggacaagacatggatagaggcaaagt 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)