BAC Information

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BAC

Clone NameMSMg01-492P07
Chromosome14 (Build37)
Map Location 101,398,848 - 101,399,382
singlet/doubletsinglet
Overlap genenone
Upstream geneKlf12, LOC100043413, EG668683, EG668684
Downstream gene1700110M21Rik, LOC100043421, LOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492P07.T7 (MSMg01no492_p07.b1)MSMg01-492P07.TJ (MSMg01no492_p07.g1)
ACCAG570589AG570590
length797716
length of high quality
(start - end)
43 (68 - 110)534 (71 - 604)
definitionCHROMAT_FILE: MSMg01no492_p07.b1 PHD_FILE: MSMg01no492_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:19 2005CHROMAT_FILE: MSMg01no492_p07.g1 PHD_FILE: MSMg01no492_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCTAAAATCCGCGGACAT
CNCTGTATACCCACAAAAAGACTAATTTTTCCGCCCTGCCAGATGCCCCA
CTCTTCTGCAATCTAGCCACAGTGAGCATTATGGATAATCACAATGGAGG
TTTAAAAAGCTAGACAGCTACCTCCCAAGATTTTAAATACATCTGCATGG
TAAGCATTTCTGTCAGACTGTTGACAAATAATGACCAGGAGATTATAATG
AAGTCTATATGAGGTGACAGACACATATTTTTACAATTCTTTGGAAGTCA
GAACACCCAGTTTTTTTTTAGAGCTGACCCACTCCTCCTCTACGTCGCTC
CCAGATTTCTGAAGGCGGGGAAGATGCCTCTTATCTTTATTTTATTTGCC
TGACACGTGATTCTTGCTCATTGCCCAACGCCCTCGCTGTCAATATAGGA
TGGTCTAATGCCATTGTCTCAAATAGCCATTTTTGTTACCAATTTGTCTC
CTGGTCTTGGCGTCCTTACACTCTATCGGACCTTCACACTTTTTAAGCTT
TTTAACCCGGGATTCCTTTATACCCCCTGTTCCCACCTTGCGCCTTGTCT
CTTTTCATCGCATACCTCTCTTGTCCTCTCCTGACCCCTTGTCTTCATTT
TGCCCCATATACCGCCCTCCTCCTTTTTCTTGCCCTGTATCTCTTTATCT
TCTTCTGGACGCTTGATTTCTAAAGCATTCCCCCCACAAGGAAGCACTGC
CCCTGACAATCATTCACACCACCTCGTCTTCGTACTTCGGTTTCTCN
CATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGATGAGTTCTGAGAGCTTCATTAATCT
TTGTGTATACTGGTACAAAATTAGAGAGTCCTTTGAGGCCATATCTATTT
AATTGGTTGATAGTGATAGATTCATCTCTAGAGCCATTAGCTGTTGGTCA
GATTTAGAGTACAGGTATGTATTTTCATTTATGGAGCAGGCCTTATACGT
ACTCAGAAAGTGATTGTTATGCTAATACTATTGTACCTTTGGTTATTGTT
AATTTTTAATCTTTTAGTAAAGTGTTCAGTTAAACATGACAGATGTAACT
AACTATCCTATCTTACATATGAGAAAACTGAAGTCTAAAAGTGAGTTATT
TACCTTGCATGGCATTGCAAAAATCTAGCAATTATCCTCAACCTAAGGTT
ATTTTCTCCACTGTTAGTCCACACCAAACTCACTACACTATGTCAGTCTG
GAATGTTCTTTTACATTTTCCTGGGCGAGAGGTGGGGTGGGGAAGCTCTG
TACTATTAATGATTATTCAGATGACTTATATCACCATCTTTCAAAGTGAT
TCTAAGCCTAGAGCTCTTTAGAGAAAAAGTACGATTATCAAACAATGGAG
CCTCTTGATGCTTTGTGAGAAAGCAACAGCTTGCTTCTGGGGACCTCTCA
GGGTCATTGTGATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_p07.g1 MSMg01no492_p07.g1 CHROMAT_FILE:
MSMg01no492_p07.g1 PHD_FILE: MSMg01no492_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:19 2005
         (534 letters)



>mm_chr14_101398533_101399467
          Length = 935

 Score =  975 bits (504), Expect = 0.0
 Identities = 528/536 (98%), Gaps = 3/536 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgatgagttctgagagcttcattaatctttgtgtatactggtacaaaattagagagtc 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 850 tctgatgagttctgagagcttcattaatctttgtgtatacaggtacaaaattagagagtc 791

                                                                       
Query: 61  ctttgaggccatatctatttaattggttgatagtgatagattcatctctagagccattag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ctttgaggccatatctatttaattggttgatagtgatagattcatctctagagccattag 731

                                                                       
Query: 121 ctgttggtcagatttagagtacaggtatgtattttcatttatggagcaggccttatacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ctgttggtcagatttagagtacaggtatgtattttcatttatggagcaggccttatacgt 671

                                                                       
Query: 181 actcagaaagtgattgttatgctaatactattgtacctttggttattgttaatttttaat 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 actcagaaagtgattgttacgctaatactattgtacctttggttattgttaatttttaat 611

                                                                       
Query: 241 cttttagtaaagtgttcagttaaacatgacagatgtaactaactatcctatcttacatat 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 610 cttttagtaaagtgttcagttaaacacgacagatgtaactaactatcctatcttacatat 551

                                                                       
Query: 301 gagaaaactgaagtctaaaagtgagttatttaccttgcatggcattgcaa-aaatctagc 359
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 550 gagaaaactgaagtctaaaagtgagttatttaccttgcatggcattgcaacaaatctagc 491

                                                                       
Query: 360 aattatcctcaacctaaggttattttctccactgttagtccacaccaaactcactacact 419
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 aattatcctcaacctaaggctattttctccactgttagtccacaccaaactcactacact 431

                                                                       
Query: 420 atgtcagtctggaatgttcttttacattttcctgggc-gagaggtggggtggggaagctc 478
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 430 atgtcagtctggaatgttcttttacattttcctgggcggag-ggtggggtggggaagctc 372

                                                                   
Query: 479 tgtactattaatgattattcagatgacttatatcaccatctttcaaagtgattcta 534
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 371 tgtactattaatgattattcagatgacttaaatcaccatctttcaaagtgattcta 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space:   484700
Effective search space used:   484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)