BAC Information

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BAC

Clone NameMSMg01-493B08
Chromosome14 (Build37)
Map Location 28,916,708 - 29,098,077
singlet/doubletdoublet
Overlap geneErc2
Upstream geneIl17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
Downstream geneLOC100040206, Wnt5a, LOC100040218, Cacna2d3, Lrtm1, Ppia-ps15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493B08.T7 (MSMg01no493_b08.b1)MSMg01-493B08.TJ (MSMg01no493_b08.g1)
ACCAG570686AG570687
length764746
length of high quality
(start - end)		661 (43 - 703)648 (74 - 721)
definitionCHROMAT_FILE: MSMg01no493_b08.b1 PHD_FILE: MSMg01no493_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:29 2005CHROMAT_FILE: MSMg01no493_b08.g1 PHD_FILE: MSMg01no493_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,097,422 - 29,098,077)(28,916,708 - 28,917,355)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGGTAGGGAAGAAAAGAAGTGATGGGTCAAGTTCAGTACAGAGCAGCT
GAACTGGCGAACTGGCTCGGCAACACCATGCTTCAGCAACGCCACTCCTC
ACCTTACTCACCGGCAAACAGAGCCCCGTGATGACGTAACATCCGCCGAT
TGTTGTGAGGACTGCAATAAGTTAACCAAGAAGATGCCTCTGAGCCTGGC
TTTGTGTTTATTTAAGAAATGTTAGCTGAGCTAATGGTCTGCAAATGATG
TATCCTCACTACTCAACTGGAAGTACCATGAAAGCAAAACTGCCCCTGGC
CTGGGCACCCTCAAAGTCACAGTCAGCTCTCTGGTGTCCTGCGTGTCATG
AGTGTGCCTGTGCTGAGACAATCTCAGACCACCAAAGCTCTGAGGAGCTG
GGAGTTTGGTGGCCCATCCCTGCCTAGAGATAGGCATAGAGCCTCCAAGA
GACAAGTAAAGTGCGCTGTCCACGTTTCACTGAGTGCTGGGATCAGAACT
GGACAAGAACCCCACATCCTAGGTCCACTTCTAGATTCTGAAATTTCCAT
GTCTGCCAGGACCTTCCTGATGAGGTGCCATCCTGTTTCATTGAAACAAG
ATTTGTTTATATTATTTTAATTATGTGTGTGTATGTATGTATGTATGTAT
GTGTCTGTGTGTTTTGGGTATGTGCACATGAATATAAGTGCCCACAGTGG
TCAGAGGTATGAGA

ACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTCCCAGTGAGATGGGTTTGCTCTG
AGACAGCCACAGTGATAGAGACAGAGAAAGTGGTAGGGGCAAGTATGGTG
ATTTTCATCTTCTGTCTTCTCCCTGTCCTTCCCAGAAGCGAGAGAAAGAG
GAGGGGAGACAAGGAGACACACTACTTCAACTGGGTTTCTACTTAAAATA
GGTCTCTCTCAAGGTTCCAAAGCCTCAAATTCCATAAGTGACATTTTTAG
GGTGTTTTTTTTTCTTGTTTTGTTTTTATATTTCCCTCTGTGGAGTTCTT
TGATTATCTCACCATAATTGCTATGTGTGTGGTGTTTCCCTGCTGTTGGC
TATATTTAAGTGAAGGAAAATTTGAGTTGATTTTGTTAGAAGTGTCCCTC
TGGGGGCATTGGATTTACTTTGATTCCACTAAGAAAATAATTTAAATTAA
AATTTAATATACTTAAAGTAAGCAATTTGAGACTGTAGATAAGAAACATT
CTGGAAGAGTTGCTAGAAAATTCTAGTTCAGTCAGACAAGATGATTTTGG
GGTACGTTTGGGAACATCTCTGAGTGTGTGTGTTGCTGTATTCACTAACA
TGTAGGGCGAGACAGCCGTTCTGGGTCATTCTGTATAGTATGCAGCTCTA
GGGAGCAGATGTGCTCATTCGGTCACAAAACCTCTCTTAAATAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_b08.b1 MSMg01no493_b08.b1 CHROMAT_FILE:
MSMg01no493_b08.b1 PHD_FILE: MSMg01no493_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:29 2005
         (661 letters)



>mm_chr14_29097245_29098305
          Length = 1061

 Score = 1253 bits (648), Expect = 0.0
 Identities = 654/656 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggtagggaagaaaagaagtgatgggtcaagttcagtacagagcagctgaactg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gaattctggtagggaagaaaagaagtgatgggtcaagttcagtacagagcagctgaactg 774

                                                                       
Query: 65  gcgaactggctcggcaacaccatgcttcagcaacgccactcctcaccttactcaccggca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gcgaactggctcggcaacaccatgcttcagcaacgccactcctcaccttactcaccggca 714

                                                                       
Query: 125 aacagagccccgtgatgacgtaacatccgccgattgttgtgaggactgcaataagttaac 184
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 713 aacagagccccgtgatgacgtaacatctgccaattgttgtgaggactgcaataagttaac 654

                                                                       
Query: 185 caagaagatgcctctgagcctggctttgtgtttatttaagaaatgttagctgagctaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 caagaagatgcctctgagcctggctttgtgtttatttaagaaatgttagctgagctaatg 594

                                                                       
Query: 245 gtctgcaaatgatgtatcctcactactcaactggaagtaccatgaaagcaaaactgcccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 gtctgcaaatgatgtatcctcactactcaactggaagtaccatgaaagcaaaactgcccc 534

                                                                       
Query: 305 tggcctgggcaccctcaaagtcacagtcagctctctggtgtcctgcgtgtcatgagtgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tggcctgggcaccctcaaagtcacagtcagctctctggtgtcctgcgtgtcatgagtgtg 474

                                                                       
Query: 365 cctgtgctgagacaatctcagaccaccaaagctctgaggagctgggagtttggtggccca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cctgtgctgagacaatctcagaccaccaaagctctgaggagctgggagtttggtggccca 414

                                                                       
Query: 425 tccctgcctagagataggcatagagcctccaagagacaagtaaagtgcgctgtccacgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tccctgcctagagataggcatagagcctccaagagacaagtaaagtgcgctgtccacgtt 354

                                                                       
Query: 485 tcactgagtgctgggatcagaactggacaagaaccccacatcctaggtccacttctagat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcactgagtgctgggatcagaactggacaagaaccccacatcctaggtccacttctagat 294

                                                                       
Query: 545 tctgaaatttccatgtctgccaggaccttcctgatgaggtgccatcctgtttcattgaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctgaaatttccatgtctgccaggaccttcctgatgaggtgccatcctgtttcattgaaa 234

                                                                   
Query: 605 caagatttgtttatattattttaattatgtgtgtgtatgtatgtatgtatgtatgt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 caagatttgtttatattattttaattatgtgtgtgtatgtatgtatgtatgtatgt 178


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_b08.g1 MSMg01no493_b08.g1 CHROMAT_FILE:
MSMg01no493_b08.g1 PHD_FILE: MSMg01no493_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:30 2005
         (648 letters)



>mm_chr14_28916508_28917555
          Length = 1048

 Score = 1230 bits (636), Expect = 0.0
 Identities = 645/648 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcccagtgagatgggtttgctctgagacagccacagtgatagagacagagaaagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttcccagtgagatgggtttgctctgagacagccacagtgatagagacagagaaagtgg 260

                                                                       
Query: 61  taggggcaagtatggtgattttcatcttctgtcttctccctgtccttcccagaagcgaga 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagggggaagtatggtgattttcatcttctgtcttctccctgtccttcccagaagcgaga 320

                                                                       
Query: 121 gaaagaggaggggagacaaggagacacactacttcaactgggtttctacttaaaataggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagaggaggggagacaaggagacacactacttcaactgggtttctacttaaaataggt 380

                                                                       
Query: 181 ctctctcaaggttccaaagcctcaaattccataagtgacatttttagggtgttttttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctctcaaggttccaaagcctcaaattccataagtgacatttttagggtgttttttttt 440

                                                                       
Query: 241 cttgttttgtttttatatttccctctgtggagttctttgattatctcaccataattgcta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgttttgtttttatatttccctctgtggagttctttgattatctcaccataattgcta 500

                                                                       
Query: 301 tgtgtgtggtgtttccctgctgttggctatatttaagtgaaggaaaatttgagttgattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtgtgtggtgtttccctgctgttggctatatttaagtgaaggaaaatttgagttgattt 560

                                                                       
Query: 361 tgttagaagtgtccctctgggggcattggatttactttgattccactaagaaaataattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttagaagtgtccctctgggggcattggatttactttgattccactaagaaaataattt 620

                                                                       
Query: 421 aaattaaaatttaatatacttaaagtaagcaatttgagactgtagataagaaacattctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaattaaaatttaatatacttaaagtaagcaatttgagactgtagataagaaacattctg 680

                                                                       
Query: 481 gaagagttgctagaaaattctagttcagtcagacaagatgattttggggtacgtttggga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaagagttgctagaaaattctagttcagtcagacaagatgattttggggtacgtttggga 740

                                                                       
Query: 541 acatctctgagtgtgtgtgttgctgtattcactaacatgtagggcgagacagccgttctg 600
           ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 acatctctgagtgtgtgtgctgctgtattcactaacatgtaggccgagacagccgttctg 800

                                                           
Query: 601 ggtcattctgtatagtatgcagctctagggagcagatgtgctcattcg 648
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggtcattctgtatagtatgcagctctagggagcagatgtgctcattcg 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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