Query= MSMg01no493_i21.b1 MSMg01no493_i21.b1 CHROMAT_FILE:
MSMg01no493_i21.b1 PHD_FILE: MSMg01no493_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:08 2005
(686 letters)
>mm_chr14_107008040_107009126
Length = 1087
Score = 1263 bits (653), Expect = 0.0
Identities = 677/685 (98%), Gaps = 5/685 (0%)
Strand = Plus / Minus
Query: 5 gaattctgtacaac-ttttcttgatcatctttactcagagtcttctttacataccgaatt 63
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gaattctgtacaacatttt-ttgatcatctttactcagagtcttctttacataccgaatt 829
Query: 64 ttgtatctttttttttccagtacattatttgcacgatcgttttgtcatccatatattctt 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 828 ttgtatctttttttttccagtacattatttgcacgattgttttgtcatccatatattctt 769
Query: 124 ggaaaacatttgaaaagaaagacatagttttgaactcacagcaaatccatggaagcttgc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ggaaaacatttgaaaagaaagacatagttttgaactcacagcaaatccatggaagcttgc 709
Query: 184 tttcatttatggaaaaacagaacaattccttcttataatgagttatttttatataagttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 tttcatttatggaaaaacagaacaattccttcttataatgagttatttttatataagttt 649
Query: 244 ggcagcgtaattattaaagtagaaaaaaaagatacaagaacacgaccaataattaatgaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ggcagcgtaattattaaagtagaaaaaaaagatacaagaacacgaccaataattaatgaa 589
Query: 304 tttcttttatacatcaagctcttcaaatatgctgtcagtgccaaccaagggctccaaaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tttcttttatacatcaagctcttcaaatatgctgtcagtgccaaccaagggctccaaaaa 529
Query: 364 gctgagatgttcactttcttaatgatgaaacgg-aaaaaatcataagaattactgtattt 422
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 528 gctgagatgttcactttcttaatgatgaaacggaaaaaaatcataagaattactgtattt 469
Query: 423 tattatatttcagattaataatgacacacattgtacagtacacagctactcgactccaag 482
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 468 tattatatttcagattaataatgacacacattgtacggtacacagctactcgactccaag 409
Query: 483 acaaacagaaaatgctgccaactacaacaggaagactgattaaaaatattagcctggtaa 542
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acaaacagaaaatgctgccaaatacaacaggaagactgattaaaaatattagcctggtaa 349
Query: 543 ggagggcggtggggaaaagtggttcctagaatgatttctggttagaaaagcaccagcttc 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggagggcggtggggaaaagtggttcctagaatgatttctggttagaaaagcaccagcttc 289
Query: 603 gggcaaaacacctggacggttgcagct-tgttcctggtctctgactccaaactccacatt 661
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 288 gggcaaaacacctggacggttgcagctct-ttcctggtctctgactccaaactccacatt 230
Query: 662 ccctcccctgcacctcacaaactca 686
|||||||||||||||||||||||||
Sbjct: 229 ccctcccctgcacctcacaaactca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_i21.g1 MSMg01no493_i21.g1 CHROMAT_FILE:
MSMg01no493_i21.g1 PHD_FILE: MSMg01no493_i21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:08 2005
(662 letters)
>mm_chr14_106829136_106830197
Length = 1062
Score = 1245 bits (644), Expect = 0.0
Identities = 660/670 (98%), Gaps = 8/670 (1%)
Strand = Plus / Plus
Query: 1 atgtcacctcctgaggcgaccgtcagttataaagggaaagtgaacgccatgcagagttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atgtcacctcctgaggcgaccgtcagttataaagggaaagtgaacgccatgcagagttct 252
Query: 61 acctttctgaacatgaaatttgagcatggagtgaggaaatgctctaaaagtggtgaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acctttctgaacatgaaatttgagcatggagtgaggaaatgctctaaaagtggtgaatat 312
Query: 121 ttttaatatgtttgcatatgtgcatatttgtacacatatgcatatatatatatatatat- 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttttaatatgtttgcatatgtgcatatttgtacacatatgcatatatatatatatatata 372
Query: 180 -------acacacacacatatgtgcacatatagaaagtgtacgcaattatacactacaaa 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tatatacacacacacacatatgtgcacatatagaaagtgtacgcaattatacactacaaa 432
Query: 233 gtgtatcctcagattttctgcttgttatgggcttctcctccttcaatgatgagtgtgtcg 292
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 433 gtgtatcctcagattttctgcttgtgatgggcttctcctccttcaatgatgagtgtgtcg 492
Query: 293 agaggagacagatgggaacacttggtagatttgctccttactaacaacacagtggagaga 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agaggagacagatgggaacacttggtagatttgctccttactaacaacacagtggagaga 552
Query: 353 actcagccacactataagacctcctatcctcaggtttctatagttctcacctcctttatg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 actcagccacactataagacctcctatcctcaggtttctatagttctcacctcctttatg 612
Query: 413 ttgatgtcacgaagattcagatgatgaactggcattaaatgtcacggtggggatggctgt 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttgatgtcacgaagattcagatgatgaactggcattaaatgtcacggtggggatggctgt 672
Query: 473 tattacataaatcataattttatcaagctccaaaacccatcatttcagtctgtagtccgt 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tattacataaatcataattttatcaagctccaaaacccatcatttcagtctgtagtccgt 732
Query: 533 ggtgctaatggtaggcggtagcaaccaggctttatcatagtgctataattttaaaagcct 592
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 733 ggtgctaatggtaggcggtagcaaccaggctttatcatagtgctataattctaaaagcct 792
Query: 593 tttttacagtactgtgtagcctccccagccttaagcaacctggctcagaactgttctgcc 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 tttttacagtactgtgtagcctccccagccttaagcaacctggctcagaactgttctgcc 852
Query: 653 actgtgaacg 662
||||||||||
Sbjct: 853 actgtgaacg 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
