Query= MSMg01no493_m23.b1 MSMg01no493_m23.b1 CHROMAT_FILE:
MSMg01no493_m23.b1 PHD_FILE: MSMg01no493_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:29 2005
(681 letters)
>mm_chr14_79849947_79851028
Length = 1082
Score = 1226 bits (634), Expect = 0.0
Identities = 670/684 (97%), Gaps = 7/684 (1%)
Strand = Plus / Plus
Query: 4 ggaattctataaaatcattacttcatataaacaggt-ttaattaatgaaagtttaccttt 62
|||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||
Sbjct: 200 ggaattctataaaatcattaattcatataaacag-tattaattaatgaaagtttaccttt 258
Query: 63 atgttgatctgcaggacattt----gctcaataggctggactaatgcccaggaatcccta 118
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 259 atgttgatctgcagggcatttatttgctcaataggctggactaatgcccaggaatcccta 318
Query: 119 gtctctataagagtggcaggcaaggaatatcagctgcaagaagcaatcctgagacaaagt 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gtctctataagagtggcaggcaaggaatatcagctgcaagaagcaatcctgagacaaagc 378
Query: 179 cacttggaaccttgcctctcaaagctcacccatcctaggtcatacaaaaaggtgggccac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cacttggaaccttgcctctcaaagctcacccatcctaggtcatacaaaaaggtgggccac 438
Query: 239 ctccaagaaagtcctctgctagcgttagcctctttttgatggctcacggcagtttgtctt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctccaagaaagtcctctgctagcgttagcctctttttgatggctcacggcagtttgtctt 498
Query: 299 ttatcaaatagcagtgaagataacaaactatttgatgccgacagtgtcatcaggttgtcc 358
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||
Sbjct: 499 ttatcaaatagcagtgaaggtaacaaactatttgatgccgacaatgtcatcaggttatcc 558
Query: 359 ttagaggtttaagcaggaagattgcacaatttcacagccagcctgtgatacagagtaaga 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttagaggtttaagcaggaagattgcacaatttcacagccagcctgtgatacagagtaaga 618
Query: 419 ctctgtctcaaatacaacactagagttaaaggtctttctttgtagcttaggctgtcttgg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctctgtctcaaatacaacactagagttaaaggtctttctttgtagcttaggctgtcttgg 678
Query: 479 aactttcagtatagctagactgtaggctgttttctaatgcaaggtacttctgggaactga 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aactttcagtatagctagactgtaggctgttttctaatgcaaggtacttctgggaactga 738
Query: 539 gcttgcatgcaagggccattaacaaaaattgaagcatgacaaaattgaaattgtgagtct 598
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 739 gcttgcatgcaagggccattaacaaaagttgaagcatgacaaaattgaaattgtgagtct 798
Query: 599 gtaggaaaacaaaaatgctggagtctatagaattcccttttggtttggcagtttctattt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gtaggaaaacaaaaatgctggagtctatagaattcccttttggtttggcagtttctattt 858
Query: 659 ttaaaa-tacgtagttttctgtgc 681
|||||| |||||||||||||||||
Sbjct: 859 ttaaaaatacgtagttttctgtgc 882
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space: 719312
Effective search space used: 719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_m23.g1 MSMg01no493_m23.g1 CHROMAT_FILE:
MSMg01no493_m23.g1 PHD_FILE: MSMg01no493_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:29 2005
(608 letters)
>mm_chr14_80037320_80038327
Length = 1008
Score = 1168 bits (604), Expect = 0.0
Identities = 607/608 (99%)
Strand = Plus / Minus
Query: 1 tgagtggtggcaggttacaggtttgaaacttgtaactgactgtgctgctttcttgaagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tgagtggtggcaggttacaggtttgaaacttgtaactgactgtgctgctttcttgaagca 749
Query: 61 gtgaactcagaatcatattttaaaatagcaggcatgctataccctcagcagagggaagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gtgaactcagaatcatattttaaaatagcaggcatgctataccctcagcagagggaagga 689
Query: 121 aataactgtctctcgtatcacagcagcaggaaggagaaagcatgacatttgaccctagac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aataactgtctctcgtatcacagcagcaggaaggagaaagcatgacatttgaccctagac 629
Query: 181 tggaccatgaagggatctgctgtatagaatgcaggcggagctacacccactgccagaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tggaccatgaagggatctgctgtatagaatgcaggcggagctacacccactgccagaaga 569
Query: 241 tctgtgaaccactgggaggctactatccatggccttacaattaccaaggatgccgctcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tctgtgaaccactgggaggctactatccatggccttacaattaccaaggatgccgctcgg 509
Query: 301 cctgcagagtcgtcatgccatgcagctggtgggtggcccgcatcttgggcatggtgtaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cctgcagagtcgtcatgccatgcagctggtgggtggcccgcatcttgggcatggtgtaaa 449
Query: 361 tccagttcatctatcaggactgccaagcaagaatcgacatgagagttgagaaccaaagaa 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 448 tccagttcatctatcaggactgccaagcaagaatcgatatgagagttgagaaccaaagaa 389
Query: 421 gcatagagcatgtccatgccaagagaccacaaagtattttatattcaacctgaataatgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gcatagagcatgtccatgccaagagaccacaaagtattttatattcaacctgaataatgt 329
Query: 481 tatcctaaacgctgttgtgcaccactgtgtgcaaatgtgctgaaagggtagtttaactct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tatcctaaacgctgttgtgcaccactgtgtgcaaatgtgctgaaagggtagtttaactct 269
Query: 541 acaattattatcattttacgacttgctttaccaataaagcctactgcaagtctttaaaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acaattattatcattttacgacttgctttaccaataaagcctactgcaagtctttaaaag 209
Query: 601 ctactttt 608
||||||||
Sbjct: 208 ctactttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
