BAC Information

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BAC

Clone NameMSMg01-495N10
Chromosome14 (Build37)
Map Location 98,253,104 - 98,412,722
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716, LOC100043787
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495N10.T7 (MSMg01no495_n10.b1)MSMg01-495N10.TJ (MSMg01no495_n10.g1)
ACCAG572787AG572788
length729753
length of high quality
(start - end)
239 (79 - 317)672 (82 - 753)
definitionCHROMAT_FILE: MSMg01no495_n10.b1 PHD_FILE: MSMg01no495_n10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:59 2005CHROMAT_FILE: MSMg01no495_n10.g1 PHD_FILE: MSMg01no495_n10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:20:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,412,484 - 98,412,722)(98,253,104 - 98,253,775)
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACCGGATCC
GCGGAATTCATCATTACCCTAAGCTGAATGGCTGCAAAACCCAGAGATAT
GCCTGCCTCGACCTTCCCGGTGTTTGTATGATAACTGAGTGTCATTGTGC
CCAGACTTGTAAATTGGGTTCTGAGGATCTAATCCTTAGGCTTGCTCAGG
TAGCTCTTGACTATGTCTTCATTTCTGAATTTTTAAAATATGTAATACCC
ATTTTTGAGTACTATAGCCAAATCACAATATAGTCTGACTCTGTTCCTAG
CAGAGAAATTCATAAAATATTTTCTCAGTTTCAGAGACTGTTAGATTCAG
ATTTAATTAAATTACCACATATTATACATGTTACTAGATTCTGGACAGGC
TACCCTTTTATATAAACGAGAAGATAGTTATAGTCCTTTATTCTCTAACT
GGTTTTTCTCTTCAAGTTTTTATTCAGCTCTGTACCTCGGTTGCCTACCC
TAAAAATCATTACCTGATTATGCTTTCTTTCCCAGAATCCCCATAACCCC
GGAACCCTTTAATTGGCCAATTCTAACCAAAATTGGGTTCCCTTTTTGGG
AACCAAACCCGGCCCTCCCGGGAATAGGGAAAGGGTTTTGGCCCCCCCCA
AACAAATCTTCTCGGAAATTTAGGGCCCCAAAAAGGAAAACATTTTTTCC
CCTAAAACCGGGTCAAAACCCCTGTGGGG
NCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCGGAAAACATAAATACT
GGGTCACATAGATCAATAAAATGGAAATACTATATTAATTTTAATTTTAC
TTTTCTTGCGTCCAAGAGGAGACCTAAATCCATTAAATGAGGTCGAATTT
GTAACAAAGAAACTTCTGAAAGTGAATGAATGAATTACTTATTCTTTTTG
GTCAAAAAGGTCAGAATAAAATTTAGGTCCTGACAGAAAACTTATTGCAA
GACAAACACAAAAAACTTGAGTTTATTTCCCAAATCCCGCACTAAAAAAG
CTGGTGTGCTAAAACTTTTTATATTCTCAGCTCTAGTTAGGTAGAGACAG
GCATGTGAATCTCTGAGGTTCAGTGGTCACTAGTTTAGAATACTTCCAGG
AAAGAAAGAGAAATTGTCTCAAAAATGGAGACTGGGAGACAACATTTAAA
TAATGACACCCAAGTTTGTCCTTTGGCCTCCACAAAAAGGAACAGACACA
CAATTTCACATAAGATATGTGTAAATACAAACACAAAGAAATTGCAGAAA
CAATTTGCAATGTAGTTTCAAATATATCTCAAATTGTCAAATTGTAATTC
TGAATGCCCATTTATAGGTATTCTAATGCATATTTCAAACCCCCTAGAAG
AGTTGATATGCCTTAAAGGGGAAGATAGAAGGGTAAGGCTTTAAAGGATA
CAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_n10.b1 MSMg01no495_n10.b1 CHROMAT_FILE:
MSMg01no495_n10.b1 PHD_FILE: MSMg01no495_n10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:59 2005
         (239 letters)



>mm_chr14_98412284_98412922
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctgcaaaacccagagatatgcctgcctcgaccttcccggtgtttgtatgataactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tggctgcaaaacccagagatatgcctgcctcgaccttcccggtgtttgtatgataactga 380

                                                                       
Query: 61  gtgtcattgtgcccagacttgtaaattgggttctgaggatctaatccttaggcttgctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgtcattgtgcccagacttgtaaattgggttctgaggatctaatccttaggcttgctca 320

                                                                       
Query: 121 ggtagctcttgactatgtcttcatttctgaatttttaaaatatgtaatacccatttttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 319 ggtagctcttgactatgtcttcatttctgaatttttaaaatatgtaatacccataattga 260

                                                                      
Query: 181 gtactatagccaaatcacaatatagtctgactctgttcctagcagagaaattcataaaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtactatagccaaatcacaatatagtctgactctgttcctagcagagaaattcataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no495_n10.g1 MSMg01no495_n10.g1 CHROMAT_FILE:
MSMg01no495_n10.g1 PHD_FILE: MSMg01no495_n10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:59 2005
         (672 letters)



>mm_chr14_98252904_98253975
          Length = 1072

 Score = 1299 bits (672), Expect = 0.0
 Identities = 672/672 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcggaaaacataaatactgggtcacatagatcaataaaatggaaatactatattaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcggaaaacataaatactgggtcacatagatcaataaaatggaaatactatattaattt 260

                                                                       
Query: 61  taattttacttttcttgcgtccaagaggagacctaaatccattaaatgaggtcgaatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattttacttttcttgcgtccaagaggagacctaaatccattaaatgaggtcgaatttg 320

                                                                       
Query: 121 taacaaagaaacttctgaaagtgaatgaatgaattacttattctttttggtcaaaaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacaaagaaacttctgaaagtgaatgaatgaattacttattctttttggtcaaaaaggt 380

                                                                       
Query: 181 cagaataaaatttaggtcctgacagaaaacttattgcaagacaaacacaaaaaacttgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaataaaatttaggtcctgacagaaaacttattgcaagacaaacacaaaaaacttgag 440

                                                                       
Query: 241 tttatttcccaaatcccgcactaaaaaagctggtgtgctaaaactttttatattctcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatttcccaaatcccgcactaaaaaagctggtgtgctaaaactttttatattctcagc 500

                                                                       
Query: 301 tctagttaggtagagacaggcatgtgaatctctgaggttcagtggtcactagtttagaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctagttaggtagagacaggcatgtgaatctctgaggttcagtggtcactagtttagaat 560

                                                                       
Query: 361 acttccaggaaagaaagagaaattgtctcaaaaatggagactgggagacaacatttaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttccaggaaagaaagagaaattgtctcaaaaatggagactgggagacaacatttaaat 620

                                                                       
Query: 421 aatgacacccaagtttgtcctttggcctccacaaaaaggaacagacacacaatttcacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgacacccaagtttgtcctttggcctccacaaaaaggaacagacacacaatttcacat 680

                                                                       
Query: 481 aagatatgtgtaaatacaaacacaaagaaattgcagaaacaatttgcaatgtagtttcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagatatgtgtaaatacaaacacaaagaaattgcagaaacaatttgcaatgtagtttcaa 740

                                                                       
Query: 541 atatatctcaaattgtcaaattgtaattctgaatgcccatttataggtattctaatgcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatatctcaaattgtcaaattgtaattctgaatgcccatttataggtattctaatgcat 800

                                                                       
Query: 601 atttcaaaccccctagaagagttgatatgccttaaaggggaagatagaagggtaaggctt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atttcaaaccccctagaagagttgatatgccttaaaggggaagatagaagggtaaggctt 860

                       
Query: 661 taaaggatacaa 672
           ||||||||||||
Sbjct: 861 taaaggatacaa 872


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space:   703044
Effective search space used:   703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)