BAC Information

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BAC

Clone NameMSMg01-496A13
Chromosome14 (Build37)
Map Location 80,331,130 - 80,331,254
singlet/doubletsinglet
Overlap geneEG629734
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneOlfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496A13.T7 (MSMg01no496_a13.b1)MSMg01-496A13.TJ (MSMg01no496_a13.g1)
ACCAG572937AG572938
length752749
length of high quality
(start - end)
633 (80 - 712)407 (338 - 744)
definitionCHROMAT_FILE: MSMg01no496_a13.b1 PHD_FILE: MSMg01no496_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:14 2005CHROMAT_FILE: MSMg01no496_a13.g1 PHD_FILE: MSMg01no496_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGC
GCGGAATTCATGCAGTTCAATCCTTCTTAACAGTCTGCTTTACGGGAACC
TTTATTACCGTGACCCGCAGTTCTGGTTCTGGAATGAGAGATCTTCCTTG
CGCCAGTCCCGAGTTTTCTTGTATTTTTTTTTTTTTTCGTCCCGGATTTT
TTCTCGTCCCGGATTTTCTCTTCCCGGGTTTCGGCACCAATTGTTAATAA
CGCGTTCTCACGACCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGC
GGCAAAGCTTTATTGCTTACTTTTTCTTGAGCCAGAGTGCAAGAGAGCAA
GCAAGGAAGGAAGGGGGAAGGTGGCGAAACCCCATCCCTTTTTAAGGAGA
ATTATCCTCCACCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCG
GCCCAGTTGTCATCACGGGAAAGGCAGAACACATGGTGGGAAAACTGCCC
CTGCATGTGTGCAGACTATGTTTACCACTTAGAACACAGCTGTCAGTGCC
ATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACAGCTAGAGACATGGC
AAGATTCGGAGGAAGATGTTATTAAAAATATATGTGTAGGAGTGATAAAA
GTAACAATATGCTTAATGAAATGTATGGATATACCTAAGTCGCACTTCAG
CAGGGAGCCTTCTGCAGAGGGATGCTCTTCAGGTAAGTGGGCAGCCTCAC
AT
CACGATGCAGTGGGTATGGGGGNGGTCGCCGGGTCAGCATTTGGAGGNNG
AACTANAGAAGTACANGCAGCGGGCNGGNCNAGCANGCAAAGAGCCCTGG
NTTTAGNCTCCAGTACTGTGCACAACCAGGTATCGTGGTCTGGCACTTGG
GAGAGGAACGGAAGATTGTGACTCAAGGCCACTTTGTGCTACAATAGCAA
GACTCATTCTCAAGTAATAAACTAAATAGAGCTGCACAAGGCCCTGTGTT
CTTTTCCAGGAGCACATGAACTAGGTGTGGTGGTTTGGATGAGATTGTCT
CCTAAAGCCTCAGGCATTTAATTATTTGGNCCCCAGNTCTTTATTTGGGG
GAGGCTTATGTCTTGGTGAAGGAAGTATGTCACTAGCAGTAGCCTTTAAG
AGTTCAAGGTTTAGGGCTGGCTATCCCAGCACTCTAGAGGCAGATGTAGG
TGGATCTCTGAGTTCCAGACCTGCCTGGTCTACAGAGTGAGTGTTCTAGG
ACAGCCAGGGCTACACAGAGAAACCTTGTTTCTAAAAATGCCCCCCCCAA
AGTGAACAAACAACCCCAAAACAAAAACAAATAAATAAGCAAACAAATAA
GAACAAGAGACACAACAACAGCAACAACAACAGAAAGAGTTCAGAGTCTC
ACAACATTGCCAGTGCAGTCTCTGATACCTACTGGTGGCTTAGGATATGA
GCTCTTCAGCCTGCTATCTCAGTCACCCTGCCTGCCTGCTGCTATGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_a13.b1 MSMg01no496_a13.b1 CHROMAT_FILE:
MSMg01no496_a13.b1 PHD_FILE: MSMg01no496_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:14 2005
         (633 letters)



>mm_chr14_80330422_80331454
          Length = 1033

 Score =  205 bits (106), Expect = 8e-57
 Identities = 121/126 (96%), Gaps = 2/126 (1%)
 Strand = Plus / Minus

                                                                       
Query: 509 ctagagacatggcaagattcggaggaagatgttattaaaaat-atatgtgtaggagtgat 567
           |||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||
Sbjct: 833 ctagagacatggcaagattcggaggaagatattatt-aaaataatatgtgtaggagtgat 775

                                                                       
Query: 568 aaaagtaacaatatgcttaatgaaatgtatggatatacctaagtcgcacttcagcaggga 627
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 taaagaaacaatatgcttaatgaaatgtatggatatacctaagtcgcacttcagcaggga 715

                 
Query: 628 gccttc 633
           ||||||
Sbjct: 714 gccttc 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)