BAC Information

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BAC

Clone NameMSMg01-496B07
Chromosome14 (Build37)
Map Location 91,389,248 - 91,389,651
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043336
Downstream geneEG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496B07.T7 (MSMg01no496_b07.b1)MSMg01-496B07.TJ (MSMg01no496_b07.g1)
ACCAG572973AG572974
length7461,022
length of high quality
(start - end)		637 (53 - 689)---
definitionCHROMAT_FILE: MSMg01no496_b07.b1 PHD_FILE: MSMg01no496_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:18 2005CHROMAT_FILE: MSMg01no496_b07.g1 PHD_FILE: MSMg01no496_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATGTTTGGGGAGTTGTTTGATATATTTCTATGGTCAAT
TTGTTTTAAATTTTAAACCAAGTTATAGAAGGTATGTTGCTTTATGTTAA
AAATGAAAACATTCAGAACACATAAAATGAAACATTGAAAGGAGTAAAGA
TTATGTAATTAAAATGTATATTAATGAAATTTACCACTGGTAAATCCTTT
ATTTTATTTTTTATATGTTTCTTAGGTATTTATTTCATTTACATTTCCAA
TGCTATCCCAAAAGTCCCTCACATGCTCCCCCACCTACTCCCCCACCCAC
CCACTCCCACCTCCCGGCCCTGGCGTTCCCCTGTACTGAGACATATAAAG
TTTGCAGGACCAATGGGCCTCTCTTTCCACTGATGGTGGACTAGGCCATC
TTCTGATACATATGCAGCTAGAGACATGAGCTCCGGGGTACTGGTTAGTT
CAAAAAGTTGTTCCACCTAGAGGGTTGCAGACCCCTTCAGCACCTTGGGT
ACTTTCTCTAGCTCCTCCATTGAGGGTCCTGTGTTCCACCCAATAGCTGT
GAGCATCCACTTCTGTGTTTGCTACTTGTAAATCAAAGCTTTAAACTTTT
TGTATATATTTTAATGTTTGATTTCTTATTTTACTCTAATATATGGTCAA
GGCTGACTTAATTCTATATATTAATGTATATTAATTTATAAAACAA

CTTCCCCACCCCACCCACCCACAACTAATTTTTTTATATCCTTCATTTAT
ATTCTTATTTTTATTACTATTTTATCTTCTATTCCATTTCCTTTTTCTCT
AATTTACTTTCCCTTTTATCCAAAAATATAAATTTCTTTTTCCAACTTAT
CTTCTCTTTTTTTTTTTTCCTTACTATATTTTCCACATCACACACATCCA
TATAAATAAATCCCCAAACATATTTCTTTTTTCCTATTANCAAAACAATA
ATACATCTATTATATAATAATATTTTTTCCTCTTTTCTTCTATTTTATAT
TTTTTTTTTTTTACTTCCTTTTTCTTATTCTTAACTATTCTCAATATTTT
TTTTTTTTTCCTTCTTTCTCTATTTCTCCCCACCTCCCTTTTATCTCACC
TTTTTTATTTATTCTCCCCTCTTCCTTTNNNNAAACAACAAACTACCTNN
TTTTTTTCNNNNNTTNNNCCCGCTTCATTAGTGGAACCAAAGCATTTGGG
GTTATGAGACAACCTTTGGGGNCCNGGNCCCGNCCCCGAGTTCANNGGNT
TCAAANGCNGANTANNAGAGGNTGNNNACCNNNTCANNTAGNGNNACGGT
GGNNACCTAAAGNNAGGGAGNGNANNANTCCCAAGANGNTCCAGANNCCN
GANGNNCCNNNCCTAAAGGGGNTGGAANGNNTTCCNTAGGGGNAACCGGN
CCCCAAGTTGCCCCNNATACCNAAGGGGGGAATGCTGNCCNGGCGTGNNC
CNNACANNNACCTCCTNCTATCTNCTGCTAGGNNTTTCTTTTTAGGTNCC
TNGTACGCTACAACCCCTTGATTCCCAAGTTNATAACCCCCTCTCGACTG
TCTNGCTGGGACCCCCCNGGGATCTCCTCTACCCCAAAGCCCCCAAACGC
GCGGAGGGNTCTTTTCGTGNGATNNGNNTCCCNNGGGGCGGGGGAGGGGG
NCNAACTGTCGGGGCCCCCCCGGNGGTGCNNNCCNGCGGGAAGGGNNNAA
ACTNNNNNNGTTCCAGTGCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_b07.b1 MSMg01no496_b07.b1 CHROMAT_FILE:
MSMg01no496_b07.b1 PHD_FILE: MSMg01no496_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:18 2005
         (637 letters)



>mm_chr14_91389248_91390284
          Length = 1037

 Score =  781 bits (404), Expect = 0.0
 Identities = 404/404 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgtttggggagttgtttgatatatttctatggtcaatttgttttaaattttaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaattcatgtttggggagttgtttgatatatttctatggtcaatttgttttaaattttaa 345

                                                                       
Query: 65  accaagttatagaaggtatgttgctttatgttaaaaatgaaaacattcagaacacataaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 accaagttatagaaggtatgttgctttatgttaaaaatgaaaacattcagaacacataaa 285

                                                                       
Query: 125 atgaaacattgaaaggagtaaagattatgtaattaaaatgtatattaatgaaatttacca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atgaaacattgaaaggagtaaagattatgtaattaaaatgtatattaatgaaatttacca 225

                                                                       
Query: 185 ctggtaaatcctttattttattttttatatgtttcttaggtatttatttcatttacattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 ctggtaaatcctttattttattttttatatgtttcttaggtatttatttcatttacattt 165

                                                                       
Query: 245 ccaatgctatcccaaaagtccctcacatgctcccccacctactcccccacccacccactc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ccaatgctatcccaaaagtccctcacatgctcccccacctactcccccacccacccactc 105

                                                                       
Query: 305 ccacctcccggccctggcgttcccctgtactgagacatataaagtttgcaggaccaatgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ccacctcccggccctggcgttcccctgtactgagacatataaagtttgcaggaccaatgg 45

                                                       
Query: 365 gcctctctttccactgatggtggactaggccatcttctgataca 408
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  gcctctctttccactgatggtggactaggccatcttctgataca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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