BAC Information

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BAC

Clone NameMSMg01-496F04
Chromosome14 (Build37)
Map Location 99,728,621 - 99,794,203
singlet/doubletdoublet
Overlap geneLOC100043400, LOC100043789
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5
Downstream geneLOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496F04.T7 (MSMg01no496_f04.b1)MSMg01-496F04.TJ (MSMg01no496_f04.g1)
ACCAG573156AG573157
length746748
length of high quality
(start - end)
682 (54 - 735)617 (86 - 702)
definitionCHROMAT_FILE: MSMg01no496_f04.b1 PHD_FILE: MSMg01no496_f04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:37 2005CHROMAT_FILE: MSMg01no496_f04.g1 PHD_FILE: MSMg01no496_f04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,728,621 - 99,729,298)(99,793,663 - 99,794,203)
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCATATCATTCTTTAGAAATAAAGCCATTTCCGTGGAG
GGTGCTCTAGAAAGTCTACACTCCAGGCCCCAGATGAGCTTGGTCATTCC
TTTATATGCCTAATACTAGAGTACGTGATTCTTCAATGTCTATGGCGAGT
ATGATACTCATATGCTATTTTTCATTTATTAGGCAATTTTTAATCTTTTT
GAAGGCAGGAGTTCTACCCTTTTTCTCCCTTTATTCTTAAAACTCATAGC
ATTGAAAGAATCCAACGAATATCTTTTTTTTTTTTCTTTTTTGGTTTTTC
GAGACAGGGTTTCTCTGCATAGCCTTGGCTGTCCTGGAACTCACTCTCTA
GACCAGGCTGGCCTTGAACTCAGAAATTCACCTGCCTCTGCTTACCAAGT
GGTGGGAATAAAGGCGTGTGCCACCATGCCCTGCAACCAATGAATATCTT
AAAACAGCAACAGCAACAACAAAACTTTCTGTGGCCCTAGTCATTGAAGC
CAGGGTCTTGTTTGTGCTAACCAAACATTCTACATCCTATATCTCTAGCC
CTCGAAGTATCTCTTGACGACGTGGACACAAGTAGGAAGGGACACCAGGA
CTGCCTTGGCACGTGATGCCAGGGCCCTATCTCAAAGGGAATTTAGACAC
CAAGTTTGAGTAAATTGGCTACGTTATTTCTTTGGTCTATAGTTGC
NAAAANNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTCTTCAGGTTT
AAGATTGGAAGAGAAAAGGTAAAAACATGTGAATGAAGTCTTATTTCCAA
TACCAGCAAGACTGTGGCTCCTTTTGAATGGAGTAGGTGAAAGCCTTGTT
AGTTGGATCAAGAGCAAAGATGCTTGCTGCTAAGCCAGAGGACCTGAGTT
CAATCCCCATGACCCACATGATGATGGAAAAAGAGAATCCTCTCTGATTT
CCACGTGTGTGCAGTGGCAAGTACACACACACAGACACACACACATACAC
ACACACACACAATGTAATTAAAAGAAAAAAAGGCACATTTTTTTAAATAT
AAAGAGTAGGTTATGAGGATGAATAATGGGTGTTTCTGTAAATGGGAAGC
AGTCAGCTCTGACATTAACAAAAGTGATGAGTCACCTTTGCGCAGCATCA
GAAAGAAGCCAGAGGAGCATTCAGACATTTTCTACCTAGGTAAGAACAGC
AGCTCTTTGGCTTGACTGTGTCCACGGAGAACATCAAAGTATTCTGCACC
CTTAACTTCTCACTGAAAATGCAAACTAAATCCAAGCAGGTACCCCTAGT
TGCCTGTCATTATGACATAACACTTAGGGGAGCAGGGATAGAAAAGGTGA
CTTCAGACACAAGCTATCCTAATAGTCAAATGTCACTCAACTAGAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_f04.b1 MSMg01no496_f04.b1 CHROMAT_FILE:
MSMg01no496_f04.b1 PHD_FILE: MSMg01no496_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:37 2005
         (682 letters)



>mm_chr14_99728417_99729498
          Length = 1082

 Score = 1311 bits (678), Expect = 0.0
 Identities = 678/678 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatcattctttagaaataaagccatttccgtggagggtgctctagaaagtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatcattctttagaaataaagccatttccgtggagggtgctctagaaagtct 264

                                                                       
Query: 65  acactccaggccccagatgagcttggtcattcctttatatgcctaatactagagtacgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acactccaggccccagatgagcttggtcattcctttatatgcctaatactagagtacgtg 324

                                                                       
Query: 125 attcttcaatgtctatggcgagtatgatactcatatgctatttttcatttattaggcaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attcttcaatgtctatggcgagtatgatactcatatgctatttttcatttattaggcaat 384

                                                                       
Query: 185 ttttaatctttttgaaggcaggagttctaccctttttctccctttattcttaaaactcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttttaatctttttgaaggcaggagttctaccctttttctccctttattcttaaaactcat 444

                                                                       
Query: 245 agcattgaaagaatccaacgaatatcttttttttttttcttttttggtttttcgagacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcattgaaagaatccaacgaatatcttttttttttttcttttttggtttttcgagacag 504

                                                                       
Query: 305 ggtttctctgcatagccttggctgtcctggaactcactctctagaccaggctggccttga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtttctctgcatagccttggctgtcctggaactcactctctagaccaggctggccttga 564

                                                                       
Query: 365 actcagaaattcacctgcctctgcttaccaagtggtgggaataaaggcgtgtgccaccat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actcagaaattcacctgcctctgcttaccaagtggtgggaataaaggcgtgtgccaccat 624

                                                                       
Query: 425 gccctgcaaccaatgaatatcttaaaacagcaacagcaacaacaaaactttctgtggccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gccctgcaaccaatgaatatcttaaaacagcaacagcaacaacaaaactttctgtggccc 684

                                                                       
Query: 485 tagtcattgaagccagggtcttgtttgtgctaaccaaacattctacatcctatatctcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagtcattgaagccagggtcttgtttgtgctaaccaaacattctacatcctatatctcta 744

                                                                       
Query: 545 gccctcgaagtatctcttgacgacgtggacacaagtaggaagggacaccaggactgcctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gccctcgaagtatctcttgacgacgtggacacaagtaggaagggacaccaggactgcctt 804

                                                                       
Query: 605 ggcacgtgatgccagggccctatctcaaagggaatttagacaccaagtttgagtaaattg 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ggcacgtgatgccagggccctatctcaaagggaatttagacaccaagtttgagtaaattg 864

                             
Query: 665 gctacgttatttctttgg 682
           ||||||||||||||||||
Sbjct: 865 gctacgttatttctttgg 882


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no496_f04.g1 MSMg01no496_f04.g1 CHROMAT_FILE:
MSMg01no496_f04.g1 PHD_FILE: MSMg01no496_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:37 2005
         (617 letters)



>mm_chr14_99793187_99794203
          Length = 1017

 Score = 1046 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Minus

                                                                        
Query: 77   ctgtggctccttttgaatggagtaggtgaaagccttgttagttggatcaagagcaaagat 136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 ctgtggctccttttgaatggagtaggtgaaagccttgttagttggatcaagagcaaagat 958

                                                                        
Query: 137  gcttgctgctaagccagaggacctgagttcaatccccatgacccacatgatgatggaaaa 196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957  gcttgctgctaagccagaggacctgagttcaatccccatgacccacatgatgatggaaaa 898

                                                                        
Query: 197  agagaatcctctctgatttccacgtgtgtgcagtggcaagtacacacacacagacacaca 256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897  agagaatcctctctgatttccacgtgtgtgcagtggcaagtacacacacacagacacaca 838

                                                                        
Query: 257  cacatacacacacacacacaatgtaattaaaagaaaaaaaggcacatttttttaaatata 316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837  cacatacacacacacacacaatgtaattaaaagaaaaaaaggcacatttttttaaatata 778

                                                                        
Query: 317  aagagtaggttatgaggatgaataatgggtgtttctgtaaatgggaagcagtcagctctg 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777  aagagtaggttatgaggatgaataatgggtgtttctgtaaatgggaagcagtcagctctg 718

                                                                        
Query: 377  acattaacaaaagtgatgagtcacctttgcgcagcatcagaaagaagccagaggagcatt 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717  acattaacaaaagtgatgagtcacctttgcgcagcatcagaaagaagccagaggagcatt 658

                                                                        
Query: 437  cagacattttctacctaggtaagaacagcagctctttggcttgactgtgtccacggagaa 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657  cagacattttctacctaggtaagaacagcagctctttggcttgactgtgtccacggagaa 598

                                                                        
Query: 497  catcaaagtattctgcacccttaacttctcactgaaaatgcaaactaaatccaagcaggt 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597  catcaaagtattctgcacccttaacttctcactgaaaatgcaaactaaatccaagcaggt 538

                                                                        
Query: 557  acccctagttgcctgtcattatgacataacacttaggggagcagggatagaaaaggtgac 616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537  acccctagttgcctgtcattatgacataacacttaggggagcagggatagaaaaggtgac 478

             
Query: 617  t 617
            |
Sbjct: 477  t 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)