BAC Information

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BAC

Clone NameMSMg01-496J10
Chromosome14 (Build37)
Map Location 93,688,438 - 93,688,878
singlet/doubletsinglet
Overlap genePcdh9
Upstream geneLOC638252, LOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496J10.T7 (MSMg01no496_j10.b1)MSMg01-496J10.TJ (MSMg01no496_j10.g1)
ACCAG573358AG573359
length7341,078
length of high quality
(start - end)		450 (53 - 502)---
definitionCHROMAT_FILE: MSMg01no496_j10.b1 PHD_FILE: MSMg01no496_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:58 2005CHROMAT_FILE: MSMg01no496_j10.g1 PHD_FILE: MSMg01no496_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNTTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTGAGACCAAAGGCTATACATTTCTCATAGTAACACAG
AAAAATATTCATTGTTTTAAAATAAACAAATCATATTTTCTCTCCCATTT
GGTTAATACTTTAATAAAATAAAATTTCTTTGTGTGTTTGAGATTTATAA
TGTATTTTTATTGTATAAATTGTGAAATGATTAGCTTAATANAAACAAGA
AAAATACACCTATAAATTCAGACAAGCCACCTAGATACACTTATATAACA
GGCCTTGTTCATAAGACACAATTTAAATGTCTAATTTTAAAAATGAGCTC
ATACTGACATAAGAACCGATAGAACAAAGAAAATTATTAAAAAGTCCAAT
ATATATATATATACATATACATATATATATACATATATATAATCTATCAG
TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTGAGA
ACAATGGGACATAGGGTGGAAAATATATCGTCCCATCAGAAAGAAGTCAA
CTGGGTGTTTCATAAAACTCTGAAGATAATAAGCTCCTTTAAAAAAAAAC
CCAAGGTCTTTTAAAAAAAAAAAAATGGCCCCCCCCCCCCCCAATTTTTC
CAAAAAAAAAAAAACTCTAAATTTTTTAAAAAAAAGGGGGGGGGCGCCCC
CCCAATTGGGCCCCCCCTATTAGGCCCCCCGGGA

TCGGCGACTAACAACCAGAAGGAAAGGAAAGGTNCGAACGGGAGGACCAA
TTTTCCAACAAAGAGGGGGAGCGAGAANCGCAACAAACTTTTTTCCGTAG
AGGGGGGGGGGCACACCGCACGCTACGGATTAACGCGTAAAACCGCAACG
TAAACGCGAAACCAAAAAAGATGACGCACTAAACATAAACGTACCGACGA
AGTTCTCCCGATCCGCGCGTCCGCGCGAGCCCCTTACTCGCGCGCTCCAC
CTTGCCATACTCCTGGGTGAGGTTTTCTGCCAGAGGATGTTGGGGATGAA
CACATCGGCCGTGTCTGTTGGGGCGGCCCCCCTCGACACGCGAAAACGAC
GGGGGAGGTGCGCTAGAGAACCGGGGGGAGGGCGGAGATGAAAAAGAAAT
TAAGTGCGGGCAAGGAGGTAACAACGCGTGGAAATGCCCAAACGGGGACA
AAAGTATATACCACCTGGGAAACGGGTCTCCTTTTGTCGCGCGTTGACAT
CTACAGTTAAACCAGTGTGAGCGGGGAAGTAAGAAGGTGACATCGCCAAC
CCCCAGCGTATAAAATAAATGAGGAAAATATTCCCCTGGTAATATCTAAT
ATATCGTGCGTGGGATAAAATTCTGTTTCCCCGCCCGGACAAAATGACCC
ATCATAACGAGCTACGAACGTGGCCAAAAGGTCGTTATAATTGATAAGAG
TAGGACGAAAATCAGGGGAATGGAGCGGAGGAGAGAACAATAAAGCGAGA
AGTAGTTCGGAGACAGGAGAACGTATACCCGCGGGAGTGCAGCGAACGGG
ATATCGCGAGTAGATCGTACATTTTGCAGCGCAGGCGTTGGTGCTTCATT
ACCTAGCCGCCTCGACGAAATATAGTACTGCAGATTGCATATGAAACCAT
ATAATATGGAGCAGTACCTTCCCACCCATTGTACGCGCGAACATAACACC
TGAGCATTATTTAGAGATGAGGGCCGCGACACGCGATAGAAAAAGAGCGG
ACGGGGTGCGAGGGCGTAAATTTTCCGCCACGCAAACGGGCCCGGAAAAT
ATTAAGAGGCTGGGGCGGAGCGATAGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_j10.b1 MSMg01no496_j10.b1 CHROMAT_FILE:
MSMg01no496_j10.b1 PHD_FILE: MSMg01no496_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:58 2005
         (450 letters)



>mm_chr14_93688234_93689082
          Length = 849

 Score =  835 bits (432), Expect = 0.0
 Identities = 441/446 (98%), Gaps = 5/446 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgagaccaaaggctatacatttctcatagtaacacagaaaaatattcattgtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgagaccaaaggctatacatttctcatagtaacacagaaaaatattcattgtt 264

                                                                       
Query: 65  ttaaaataaacaaatcatattttctctcccatttggttaatactttaataaaataaaatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaaaataaacaaatcatattttctctcccatttggttaatactttaataaaataaaatt 324

                                                                       
Query: 125 tctttgtgtgtttgagatttataatgtatttttattgtataaattgtgaaatgattagct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctttgtgtgtttgagatttataatgtatttttattgtataaattgtgaaatgattagct 384

                                                                       
Query: 185 taatanaaacaagaaaaatacacctataaattcagacaagccacctagatacacttatat 244
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taata-aaacaagaaaaatacacctataaattcagacaagccacctagatacacttatat 443

                                                                       
Query: 245 aacaggccttgttcataagacacaatttaaatgtctaattttaaaaatgagctcatactg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacaggccttgttcataagacacaatttaaatgtctaattttaaaaatgagctcatactg 503

                                                                       
Query: 305 acataagaaccgatagaacaaagaaaattattaaaaagtccaatatatatatatatacat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acataagaaccgatagaacaaagaaaattattaaaaagtccaatatatatatatatacat 563

                                                                       
Query: 365 atacatatatatatacatatatataatctatcagtctatctatctatctatctatctatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atacatatatatatacatatatataatctatcagtctatctatctatctatctatctatc 623

                                     
Query: 425 tatctatctatctatctattgagaac 450
           |||||||||||||||    |||||||
Sbjct: 624 tatctatctatctat----tgagaac 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 849
Length adjustment: 10
Effective length of query: 440
Effective length of database: 839
Effective search space:   369160
Effective search space used:   369160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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