BAC Information

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BAC

Clone NameMSMg01-496P10
Chromosome14 (Build37)
Map Location 25,566,192 - 25,566,851
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
Downstream geneLOC100039411, Zmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496P10.T7 (MSMg01no496_p10.b1)MSMg01-496P10.TJ (MSMg01no496_p10.g1)
ACCAG573644AG573645
length1,062746
length of high quality
(start - end)
---661 (80 - 740)
definitionCHROMAT_FILE: MSMg01no496_p10.b1 PHD_FILE: MSMg01no496_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:28 2005CHROMAT_FILE: MSMg01no496_p10.g1 PHD_FILE: MSMg01no496_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGTTTTTTTGAATAGACAGGGCGGCGTGTGTGGAGTGGGGCTCTTTTCC
CAAGAGAGGTGCCGGTAGGAAGTGTCTTCGTATTCGCAAGAAGTAAAGAG
ATATAAGAAGAGCGGATAGGCTACTGTGAAACATATGCAACAACAGAGAG
AAGGATATTATGCCCTCAGCGCGTGCATTCAGTTAATGTATGTTGTCTCT
TTGACCCCTCGCATCGCCGTATTTCTTTACGGCGCCCCCTGTGTGTGCGT
TTTCGCGGCCGCCCTCATTATGTACACATTTCCCCCGCGCCGGTGTATTT
GCGCTCAACTAGAGTTTATAAAACATGAGCCGGGCCCCGAGAATATATTA
TCTGGTGCGCGAGCTACGTCCGGGGTGCTGTCGCGGTTTTCCTTTAAGGA
GTGGTGTGTTAGGCTTGCTGTTATGATTACGGCGGCAAATAATACGAACG
GTTACGGCCCTTGGGTCGGCCAATTGCAGGGTATGTTTTCATGCGAAAAA
AAATAGGCGGCCCGCGCTCCATATCCANCTCGACGAATTACACCAATGTA
GGAGCCGCGGCTACTAAAAGTAACGCGCGACGCATAATATTGCGTTTGGT
CGAATGCGTCGCGCACAGATGTGTGATGTCTCTTTTATTAATTATGTCGC
CCGCGTACCAGTGTTAATATGAAATAAATATGATGGCGGACATACGAGAG
GCGGTAAATATACAATCCCAACATATTGGAGCCGTATTTATACTAAATGA
ATGTGGTGGTTGTGCATCCAGCACCGCTTATGCCGACTACAGTACCATCT
CGTCATTCGTCAGTTGTATAATCTCATATGGTGGGTATTACCTACATTGT
TCGAATTTTATGACACAGCGGGGAGGGTGAGACACAGTCGACGATTGTTC
TTACAAACGAATTAGGTGGTGGTGTTGCTGCGCTCTCGTTTATTACGACG
TTTATTTTTTTATTGCGCGCCTATATTACCGCCGGTTTATTAATTGCGCG
CGTGCGGTGACGTACGACGAGGTGGGAGAAGGAGTGAGCGTTGATATAAC
GTCAGCCTATTN
AAAAAAACAATGATAGTGGGTGGCCTGGNGGNCGCCGGTCAAAAAGGGGT
AGGNGACACTATAGATGCATAAAAGGAGTTCTGCCCTAAGTGTGATGTTA
GTGTTCTTGCCTTGACACATCCTGAGAAGAGAAAACCTTAATTGAAGGGT
TGTCTGCATTGATTGTGAGCATGTCTTTGAATCCTTTACTTAGTTGTTCA
TTAGCAGTATCATTCCTAGGCAGGTTATCCTTGGTTGTATAAGAAAGGCA
GTTTTTCAGAGAAAAGCAAGCCATTAAGCATCTTTCTTTCATGATTCCTG
CCTCTACTTCTGCTTAAGTTCNCTCNTTAGCTTTGCACATTGTTGGATTG
TGATTGGAACAATCACATGAGTAAACCTTTCCTTCCCTAAGTTGCTTTTG
GTCATGATATTTACCACACCAACAGAAGAGCAAACCAGGACACTTGGGTA
AGCTAGAGAGACTCAGCAGAAGCTCAGTTTCTACATGTGTGACATGGTTA
TAGAGGCAGTGTCTGATACACAAAGCTAAATGGTTGATGAGACAATGCAG
AGGAATGCCCATTCTGGATACTGTGCATAGAAGAGCTCAGATACCTCTTC
CCTGTCATTCCCCATAGGTGCCCCCTGTGTTCTAGGATCTGCCTTTTCAC
CATCCTCTCTTCATCTGACATCACTCATTACAGTATCCTTGGAGTTTCTC
TCCTATCCCCTTACCTGTGGCTCCCTCTGTAGTCAGAGACATCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_p10.g1 MSMg01no496_p10.g1 CHROMAT_FILE:
MSMg01no496_p10.g1 PHD_FILE: MSMg01no496_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:28 2005
         (661 letters)



>mm_chr14_25565992_25567052
          Length = 1061

 Score = 1160 bits (600), Expect = 0.0
 Identities = 646/667 (96%), Gaps = 13/667 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgccctaagtgtgatgttagtgttcttgccttgacacatcctgagaagagaaaacctt 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tctgccctaagtgtgatgttagtgttcttgccttgacacaacctgagaagagaaaacctt 260

                                                                       
Query: 61  aattgaagggttgtctgcattgattgtgagcatgtctttgaatcctttacttagttgttc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aattgaagggttgtctgcattgattgtgaacatgtctttgaatcctttacttagttgttc 320

                                                                       
Query: 121 attagcagtatcattcctaggcaggttatccttggttgtataagaaaggcag-----ttt 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 321 attagcagtatcattcctaggcaggttatccttggttgtataagaaaggcagcaagc--- 377

                                                                       
Query: 176 ttcagagaaaagcaagccattaagcatctttctttcatgattcctgcctctacttctgct 235
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 378 --cagagaaaagcaagccattaagcatctttctttcatgattcctacctctacttctgct 435

                                                                       
Query: 236 taagttcnct-cnttagctttgcacattgttggattgtgattggaacaatcacatgagta 294
           ||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 taagttc-ctgctttagctttgcacattgttggattgtgattggaacaatcacatgagta 494

                                                                       
Query: 295 aacctttccttccctaagttgcttttggtcatgatatttaccacaccaacagaagagcaa 354
           |||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 495 aacctttccttccctaa-atgcttttggtcatgatatttaccacagcaacagaagagcaa 553

                                                                       
Query: 355 accaggacacttgggtaagctagagagactcagcagaagctcagtttctacatgtgtgac 414
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 554 accaggacacttgggtaagctagagagactcatcagaagctcagtttctacatgtgtgac 613

                                                                       
Query: 415 atggttatagaggcagtgtctgatacacaaagctaaatggttgatgagacaatgcagagg 474
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 614 atggttatagaggcagtgtctgatacacaaagctacatggttgatgagacaatgcagagg 673

                                                                       
Query: 475 aatgcccattctggatactgtgcatagaagagctcagatacctcttccctgtcattcccc 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aatgcccattctggatactgtgcatagaagagctcagatacctcttccctgtcattcccc 733

                                                                       
Query: 535 ataggtgccccctgtgttctaggatctgccttttcaccatcctctcttcatctgacatca 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ataggtgccccctgtgttctaggatctgccttttcaccatcctctcttcatctgacatca 793

                                                                       
Query: 595 ctcattacagtatccttggagtttctctcctatccccttacctgtggctccctctgtagt 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 ctcattacagtatccttggagtttctctcctatccccttacctgtggctccctctgtagt 853

                  
Query: 655 cagagac 661
           |||||||
Sbjct: 854 cagagac 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)