BAC Information

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BAC

Clone NameMSMg01-497F08
Chromosome14 (Build37)
Map Location 62,238,343 - 62,238,802
singlet/doubletsinglet
Overlap genenone
Upstream geneSpata13, C1qtnf9, Mipep, LOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg
Downstream geneLOC668253, Dleu7, Rnaseh2b, Gucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497F08.T7 (MSMg01no497_f08.b1)MSMg01-497F08.TJ (MSMg01no497_f08.g1)
ACCAG573927AG573928
length763764
length of high quality
(start - end)
646 (49 - 694)605 (80 - 684)
definitionCHROMAT_FILE: MSMg01no497_f08.b1 PHD_FILE: MSMg01no497_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:59 2005CHROMAT_FILE: MSMg01no497_f08.g1 PHD_FILE: MSMg01no497_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATGAATTTTCATAGCAAGAAAGTTGAACCTGATTATTTTTGT
CTCCTAAGAGTAAAGAATATCTAAATCAAATAGCAATAAGAATGGAACTG
ACCCTGGAGCAAAGTGATACCTGCGTGTATCCTAGCCGTTGGGAGGTGAA
GGAAGGAAGTGGGAAACACAGCATATCAAGGTAAAAAACTTGGAACATTA
TTAAGATAGAAAGGAGGTATAAGGAGCCCGTGCTCTTGTTCTGGAAGGTT
GACGATGATGTTACTGAAGGATGAGAAACCACCTGAAACACTGAGCCCTC
TCACAATACTACATTTGAACTGATAGTTCGGCATTTATTTTTAAAATGTT
TTGATTAAAGGTCACTGGCTTTACCAAGCTAAGACTGAAAACTTCTGGAT
AGACAGACAAATTTGGCAATAATTCAAATAAAGCCAGTGAGAGTAGGCAA
GTTCACTGAAACTCACACCTTTAATCCCAGCACTCGGGATTAAAAAAAGC
TCACACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCT
GGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACATAGAGAAACCCTA
TCTCAAAAAACCAAAAAAAAAAAAAAAAGTTGATAGGACTAANGAGATGG
CTCAAAGGTTTAAAGCACTTGCTCTTACAGAGGACCAGGGTTTAGTTCCA
ACACCTTCATCAT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAGAGCAGGAACCTGGAG
ACAGGAGCTTATGCACAATCTATGGAGGAGTGCTGCTTACTAGTTTGTTC
TCATGACTTGCTCAGACTGCTTTTTTATAGAACCCAGAACCACTAGCCCA
GGGATAGCCCCACCCACAATGCACTGGGCCCTTCCCCATTGGCCACTAAT
TGAGAAAAGTCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAG
GCTGTTTCTCTTTGATGACTCTAGCTTATGTCAAGTTGACACAAAACCAG
CCAGTGTAGAGAGGGAAGAGAATTATGCAGAAGCCCTGCATGCCTGTCTC
CTAGCTTCATGCAGTGCCTTGGAGATACACAACAGATGCCTCTCTGGTAG
AAACACTCCATTCTGCAGGGATACTTGGTGGGCAGGGGGGGTAAAGAGTT
CAAAACAGAATCAGAAAGTCCCTGAAACTGAACAGATTCACTAGGCCTCT
CCCTCCAAGAGTAAGCAAGAAAGCCCTTGAGAGTCACTCTCAGACAAGAC
AAGCTGCAGAGAAGACACCAGAGCTGCCTGGAAGAAGCAGAAATCAGACA
AGCTGCCTAGAAGAGGCAACCAAGTCACTTGGAAGGGACACTTGTTAGTT
TGTTGAGTTATATACAGGCTGTGCAGTTTGCTTCAGGTTCCCAGCTGGAG
AGAGCTGTCAGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_f08.b1 MSMg01no497_f08.b1 CHROMAT_FILE:
MSMg01no497_f08.b1 PHD_FILE: MSMg01no497_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:59 2005
         (646 letters)



>mm_chr14_62238141_62239183
          Length = 1043

 Score =  777 bits (402), Expect = 0.0
 Identities = 448/464 (96%), Gaps = 5/464 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatgaa-ttttcatagcaagaaagttgaacctgattatttttgtctcctaagag 62
           |||||||||||| | ||| ||||||| |||||| || |||||||||||||||||||||||
Sbjct: 662 ggaattcatgaagtcttc-tagcaaggaagttggacgtgattatttttgtctcctaagag 604

                                                                       
Query: 63  taaagaatatctaaatcaaatagcaataagaatggaactgaccctggagcaaagtgatac 122
           ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 603 taaagaatatctaaatcaaatagcaataagaatggaactgatcctgaagcaaagtgatac 544

                                                                       
Query: 123 ctgcgtgtatcctagccgttgggaggtgaaggaaggaagtgggaaacacagcatatcaag 182
           ||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||
Sbjct: 543 ctgcgtgtatcctagccattgggaggtgaaggaaggaagtgggaa--acagcatatcaag 486

                                                                       
Query: 183 gtaaaaaacttggaacattattaagatagaaaggaggtataaggagcccgtgctcttgtt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gtaaaaaacttggaacattattaagatagaaaggaggtataaggagcccgtgctcttgtt 426

                                                                       
Query: 243 ctggaaggttgacgatgatgttactgaaggatgagaaaccacctgaaacactgagccctc 302
           |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 425 ctggaagg-tgacggtgatgttactgaaggatgagaaaccacctgaaacactgagccttc 367

                                                                       
Query: 303 tcacaatactacatttgaactgatagttcggcatttatttttaaaatgttttgattaaag 362
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcacaatattacatttgaactgatagttcggcatttatttttaaaatgttttgattaaag 307

                                                                       
Query: 363 gtcactggctttaccaagctaagactgaaaacttctggatagacagacaaatttggcaat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtcactggctttaccaagctaagactgaaaacttctggatagacagacaaatttggcaat 247

                                                       
Query: 423 aattcaaataaagccagtgagagtaggcaagttcactgaaactc 466
           |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 246 aattcaaataaagccaatgagagtaggcaagttcactgaaactc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1043
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1033
Effective search space:   656988
Effective search space used:   656988
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)