BAC Information

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BAC

Clone NameMSMg01-498E13
Chromosome14 (Build37)
Map Location 21,358,109 - 21,358,694
singlet/doubletsinglet
Overlap genePpp3cb
Upstream geneLOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17
Downstream geneUsp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl, Ap3m1, Adk, Myst4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498E13.T7 (MSMg01no498_e13.b1)MSMg01-498E13.TJ (MSMg01no498_e13.g1)
ACCAG574647AG574648
length775774
length of high quality
(start - end)		649 (48 - 696)586 (74 - 659)
definitionCHROMAT_FILE: MSMg01no498_e13.b1 PHD_FILE: MSMg01no498_e13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:15 2005CHROMAT_FILE: MSMg01no498_e13.g1 PHD_FILE: MSMg01no498_e13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTGGTTTTACTGTTTTGAAATGTCAGTCACGGGTCTTAGATG
AAGGCTTTGGTCCACAGTACAATGTTCATAGGTAGTACAATATGCACTCT
GAAAAGTGATTGGAACCTGAGGGCTTTAATCAATGAGTTAATCAATCAAT
GGATATACAAGGAATGGGTAAGAAACTTGTAAATGAACGCGGTCATTTGG
ACATGTCTTCAAAGCTGTTTATTGTCTTTGGTCCCTTCTTGTGTTAATGC
TGACTAGCTGCCAATAATTTGAACAATTGTGCTGCTTCATGCCCCTTTCA
TATTCATGTGATCATGGATCCTTCTTTCATTTGTGATAGTAACATGTCAG
GTTCAGAGGAAACATTGCTTAATTCTTTAATTTTTTTTTTTCTAGAAACG
GCATGCTAAGTGTAGAACCAATGTTACCTAGTTGTTGTAGTTGGAATATT
CAGCCATGGTATCTGTTGTCTTTGAGACTCAAGAACTTTGCTGCTACCCA
CACCACTGGTCTTTCTTCTGAATTCACTATTGTATTTTAGTAGATTTCAA
TATCATATGAAGTACCAGAAAATGAGTGAAAAATGACAGTGGTGAAATGT
GTTTAGAATCATTAAATTACACACTTAAAAATAAATAAATCAATGGATTT
ATTTAGTATATAAATCAAACTCCAATAAAACTTCTGAAAAGGCTTAACCA
AATGTGATGCTTCTCATGTGAGTTG

NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTTTTTCAGTAAGAAACTATTTCCA
GTCATATAGTGTACACATTTAATCCCAGCATTTGGGAGGGAGACACAGGA
GCGCTTTTAAGTTCTGCCTCAGCCTGAATGAAATAGGAGAAACTATTTAA
ACGAGCAAATCTTAAACAAACAAAACTACCTAAATTTTTGAGCCTGGAAA
TTAGCTGTGCTTTGTTTTATTGAAGATGAATAGTAGAATTAAAGTTTTCT
AGTAGAAATTAGAAGAATTGAAGTAATGTTAACACATTGCAGTTAAAAGA
AAATTCAGTAATAAAGATGTAAAAAAAAAAAACTCCTGCAAGAATTTGAA
TAATCAAAAAGACTTGGAGTCATTATAGAAGCAAGTCAATGATTAATAGC
CTTTATCTTGCAAAGAAACTGAGTTCCTTTCCCTACAAGGAACCCATGTC
TGATGGCTTAACAACCACCTGTAACTCCAGTTCCATTGCTTTGGAAGCCC
TCTTCTGGCCTGTAAGGGCATCTGCTGCACACATGTGGTGTACATACACA
TACTCAGGACCACACTTATTTTTATAAAATAAGAATATGGCTAGAGAGGT
AGCTCAGTGGTTAGGAATATTTGTTACTTGTTGCTTTTAGAGAAGACTCT
CAGTTCCCAGCATCAACCTTGCGGTTAACAAGCATCTATAACTCCAGTTC
CAGAAATCTTGATACCCTTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_e13.g1 MSMg01no498_e13.g1 CHROMAT_FILE:
MSMg01no498_e13.g1 PHD_FILE: MSMg01no498_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:15 2005
         (586 letters)



>mm_chr14_21358030_21359015
          Length = 986

 Score = 1087 bits (562), Expect = 0.0
 Identities = 580/586 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttttttcagtaagaaactatttccagtcatatagtgtacacatttaatcccagcattt 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 665 ctttttttcagtaagaaactatttacagtcatatagtgtacacatttaatcccagcattt 606

                                                                       
Query: 61  gggagggagacacaggagcgcttttaagttctgcctcagcctgaatgaaataggagaaac 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 605 gggagggagacacaggagcgcttttaagttctgtctcagcctgaatgaaataggagaaac 546

                                                                       
Query: 121 tatttaaacgagcaaatcttaaacaaacaaaactacctaaatttttgagcctggaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tatttaaacgagcaaatcttaaacaaacaaaactacctaaatttttgagcctggaaatta 486

                                                                       
Query: 181 gctgtgctttgttttattgaagatgaatagtagaattaaagttttctagtagaaattaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gctgtgctttgttttattgaagatgaatagtagaattaaagttttctagtagaaattaga 426

                                                                       
Query: 241 agaattgaagtaatgttaacacattgcagttaaaagaaaattcagtaataaagatgtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agaattgaagtaatgttaacacattgcagttaaaagaaaattcagtaataaagatgtaaa 366

                                                                       
Query: 301 aaaaaaaaactcctgcaagaatttgaataatcaaaaagacttggagtcattatagaagca 360
           |||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 365 aaaaaaaaacccctgcaagaatttgaataatcaaaaagacttggagtcgtcatagaagca 306

                                                                       
Query: 361 agtcaatgattaatagcctttatcttgcaaagaaactgagttcctttccctacaaggaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 agtcaatgattaatagcctttatcttgcaaagaaactgagttcctttccctgcaaggaac 246

                                                                       
Query: 421 ccatgtctgatggcttaacaaccacctgtaactccagttccattgctttggaagccctct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ccatgtctgatggcttaacaaccacctgtaactccagttccattgctttggaagccctct 186

                                                                       
Query: 481 tctggcctgtaagggcatctgctgcacacatgtggtgtacatacacatactcaggaccac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tctggcctgtaagggcatctgctgcacacatgtggtgtacatacacatactcaggaccac 126

                                                         
Query: 541 acttatttttataaaataagaatatggctagagaggtagctcagtg 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 acttatttttataaaataagaatatggctagagaggtagctcagtg 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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