Query= MSMg01no499_l24.b1 MSMg01no499_l24.b1 CHROMAT_FILE:
MSMg01no499_l24.b1 PHD_FILE: MSMg01no499_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:13 2005
(633 letters)
>mm_chr14_10406367_10407399
Length = 1033
Score = 1131 bits (585), Expect = 0.0
Identities = 618/629 (98%)
Strand = Plus / Plus
Query: 5 gaattcatttttcattatcagatctttttttctagtttcttttaagaagtggcagcattg 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttccattatcagatctttttttctagtttcttttaagaagtggcagcattg 264
Query: 65 tgaatccaagtgcacctgttataatggaaactatgagaaaacagtacagaatattaacag 124
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgaatccaagtgcaccggctataatggaaactatgagaaaacagtacagaatattaacaa 324
Query: 125 cttagttaattaagttcctttttagagcattctgtgtgtgtgtgtctctgtgtataagca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttagttaattaagttcctttttagagcattctgtgtgtgtgtgtctctgtgtataagca 384
Query: 185 tgtataatacatatccacatatatttacaaatggtatgcatatatatatttacaagcatg 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatataatacatatccacatatatttacaaatggtatgcatatatatatttacaagcatg 444
Query: 245 tctatgtgtaagatttctgtatctagtgaacacatgtcaattctatcagagagcaggttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctatgtgtaagatttctgtatctagtgaacacatgtcaattctatcagagagcaggttt 504
Query: 305 tcagttgaatttaatctcctattatatttcagttttattatcgaaccttttcttcctgtg 364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 tcagttgaatttaatctcctattatatttcagttttattatcgaacctttccttcctgtg 564
Query: 365 gctatatgagtgcagtagtaatctatagatgaggcttgttcacaggtgcaatgtagcgat 424
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 565 gctatatgagtgcagtagtaatctatagatgaggcttgttcacaggtgcagtctagcgat 624
Query: 425 ttgtattatgtagacttgaattggtgaatagtgcagccaatggcagccaacacttctaat 484
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 625 ttgtattatgtagacttgaattgttgaatagtgcagccaatggtggccaacacttctaat 684
Query: 485 gtggggtgggggcagtgtctctgctgatcattatttcacacataacccttacagcttccc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtggggtgggggcagtgtctctgctgatcattatttcacacataacccttacagcttccc 744
Query: 545 attggtaggcagacactatctaactccatctgccctggaggaaattaatttacttaccca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attggtaggcagacactatctaactccatctgccctggaggaaattaatttacttaccca 804
Query: 605 ggtagataatgctaggtgccagcattttc 633
|||||||||||||||||||||||||||||
Sbjct: 805 ggtagataatgctaggtgccagcattttc 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_l24.g1 MSMg01no499_l24.g1 CHROMAT_FILE:
MSMg01no499_l24.g1 PHD_FILE: MSMg01no499_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:13 2005
(574 letters)
>mm_chr14_10476442_10477411
Length = 970
Score = 1060 bits (548), Expect = 0.0
Identities = 566/574 (98%), Gaps = 4/574 (0%)
Strand = Plus / Minus
Query: 1 caggaatgaaaattatagcaactcacagaaaagacatggctggcaaacgtgattaggagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 caggaatgaaaattatagcaactcacagaaaagacatggctggcaaacgtgattaggagt 711
Query: 61 tattgtttaaacccaggggcatagaattctccctgctggtgaacttaagttaagtaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tattgtttaaacccaggggcatagaattctccctgctggtgaacttaagttaagtaagtt 651
Query: 121 taatgtggtgtaatttaattactaagcatagttttcttctcagtgggaagagataccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 taatgtggtgtaatttaattactaagcatagttttcttctcagtgggaagagataccagg 591
Query: 181 tttttgctaagaacaaaaggaaggctgtaaatagccctcagtgatggctggctactaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 590 tttttgctaagaacaaaaggaaggctgtaaatagccctcagtgatggctggttactaagg 531
Query: 241 gggaaaaaaatctaagagcattcagctgtcttttgcataatgtttgagggtagatgcatc 300
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 530 ggg----aaatctaagagcattcagctgtcttctgcataatgtttgagggtagatgcatc 475
Query: 301 ctggactcattgtaaattttatttaattaatgctttgaggattaacagcaaagcagacct 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ctgaactcattgtaaattttatttaattaatgctttgaggattaacagcaaagcagacct 415
Query: 361 tgcagcccggaatataaagcttctgggattacccagaaagtgattttccccagaaaggat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgcagcccggaatataaagcttctgggattacccagaaagtgattttccccagaaaggat 355
Query: 421 gtccccattaataattaatgccaggcgttttcataaatgtcagattcccactgcaagcag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtccccattaataattaatgccaggcgttttcataaatgtcagattcccactgcaagcag 295
Query: 481 caacttgaccctcagtaataaaccatttaagattcattaaagggaagcatcattcttaaa 540
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 294 caacttgaccctcagtaataaaccatttaagattcattaaagagaagcatcattcttaaa 235
Query: 541 ctgcttgccatggcacgtgagctcatccataatg 574
||||||||||||||||||||||||||||||||||
Sbjct: 234 ctgcttgccatggcacgtgagctcatccataatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 970
Length adjustment: 10
Effective length of query: 564
Effective length of database: 960
Effective search space: 541440
Effective search space used: 541440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
