BAC Information

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BAC

Clone NameMSMg01-501D14
Chromosome14 (Build37)
Map Location 67,191,886 - 67,192,483
singlet/doubletsinglet
Overlap genenone
Upstream geneElp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
Downstream geneAdra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870, Pnma2, LOC672614, Bnip3l, Ppp2r2a, Ebf2, EG628416, LOC100043046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501D14.T7 (MSMg01no501_d14.b1)MSMg01-501D14.TJ (MSMg01no501_d14.g1)
ACCAG576874AG576875
length707690
length of high quality
(start - end)
671 (37 - 707)593 (57 - 649)
definitionCHROMAT_FILE: MSMg01no501_d14.b1 PHD_FILE: MSMg01no501_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:01 2005CHROMAT_FILE: MSMg01no501_d14.g1 PHD_FILE: MSMg01no501_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTG
TTTTTACTAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTG
TATCCATTCCTTTGTTGAAGGACATCTGGGTTCTTTCCAGCTTCTGGATA
TTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATTACAA
GTTGGAGCATCTTCTGGGTATATGCCCAGGAGTGGTATTGCTGGATCTTC
TGGTAGTACTATGTCCAGTTTTCTGAGGAACCGCCAAACTGATTTCCAGA
GTGGTTGTACAAGCTTGCAATCCCATCAGCAATGGAGGAGTGTTCCTCTT
TCTCCACATCCTCACCAGCATCTTCTGTCACCTGAAGATGTTCTTAGCCA
TTCTAACTGGTGTGAGGTGAAATCTCAGGGTTGTTTTGATTTGCATTTCC
CTGATGATTAAGGATGTTGAATATTTTTGTTAGGTGCTTCTCAGCCATTC
GGTATTTCTCAGTTGAAAATTCTTTGTTTAGCTCTGTACCCCATTTTTAA
TAGGGTTATTTGGTTTTCTGGAGTCCAACTTCTTGGATTCTTTATGTATA
TTGGATATTAGTCCCCTATCGGATTTAGGATTGGTAAAGATCTTTTCCCA
ATCTGTTGGTTGCTGTTTTATGAAGCCACAACATATCCAAATTTATGGGA
CACAATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTTGGCATTCCCTGCACTATTTGTGGTCTCTGACTGGGTTGAG
TCTGGGAAAAGGGCTTCCATCTGCTGCAGGCTTCTGAGAAGAGCATGGGC
AGCCATTTCTCTTCAAGAAAGTGTGTCTCAAGGCAGGAGCTTTGCAATTC
AATTTTTTGGTCACTGCCTCCACATTTCCCTCTAACCCCTCATCTTTCTG
GAGTCGGGAAGGCGTTGAAAGGAGAAGACTTGCCAAAGTCAAACTTGAAA
GCTTCTTAATTTAGCCTTTGGCTAGGCCTATGTTTTCATGTAAGAGCCAA
GAATAATCCTGAATCAGACAAACCTCACTTTCTAAGCCAAGAAATGTAGA
CCCGCAACCTCAGTACAATTCTGGAAAATACAAACTTTCTTTTGCTCTTA
TCCCTCTGCTGATGTTTGTGCATGTATGTGCACACACACATATGGTAGGT
AGTTAGGAGCAAAACTGGAAATTCTATCCTGTATCCCATAGTGGCTGCCT
CCCTGATTCAACCAGACCCCTATCTTGGTGTCCTGAATCCTTCCACACGC
CCGTCTCCCTCTGATGCCTCACCACCATAGAAGGAGCCTGACTTCCAGTT
GACAAGCCTAGCTCGTATTCTTCCTCCAAGGAAAATCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_d14.g1 MSMg01no501_d14.g1 CHROMAT_FILE:
MSMg01no501_d14.g1 PHD_FILE: MSMg01no501_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:01 2005
         (593 letters)



>mm_chr14_67191686_67192683
          Length = 998

 Score = 1064 bits (550), Expect = 0.0
 Identities = 585/598 (97%), Gaps = 5/598 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttggcattccctgcactatttgtggtctctgactgggttgagtctgggaaaagggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttggcattccctgcactatttgtggtctctgactgggttgagtctgggaaaagggctt 260

                                                                       
Query: 61  ccatctgctgcaggcttctgagaagagcatgggcagccatttctcttcaagaaagtgtgt 120
           |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ccatctgctgcaggcttctgaggagagcatgggcagccatttctcctcaagaaagtgtgt 320

                                                                       
Query: 121 ctcaaggcaggagctttgcaattcaattttttggtcactgcctccacatttccctctaac 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaaggaaggagctttgcaattcaattttttggtcactgcctccacatttccctctaac 380

                                                                       
Query: 181 ccctcatctttctggagtcgggaaggcgttgaaaggagaagacttgccaaagtcaaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctcatctttctggagtcgggaaggcgttgaaaggagaagacttgccaaagtcaaactt 440

                                                                       
Query: 241 gaaagcttcttaatttagcctttggctaggcctatgttttcatgtaagagccaagaataa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagcttcataatttagcctttggctaggcctatgttttcatgtaagagccaagaataa 500

                                                                       
Query: 301 tcctgaatcagacaaacctcactttctaa-gccaagaaatgtagacccgcaacctcagta 359
           ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 501 tcctgaatcagacaaacctcactttctaaagccaagaaatgtagacccgcaatctcagta 560

                                                                       
Query: 360 caattctggaaaatacaaactttcttttgctcttatccctctgctgatgtttgtgcatgt 419
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 561 caattctggaaaatacaaactctcttttgctcttatacctctgctgatgtttgtgcatgt 620

                                                                       
Query: 420 atgtgcacacacacatatggtaggtag-t---taggagcaaaactggaaattctatcctg 475
           ||||||||||||||||||||||||||| |   ||||||||||||||||||||||| ||||
Sbjct: 621 atgtgcacacacacatatggtaggtaggtaggtaggagcaaaactggaaattctaccctg 680

                                                                       
Query: 476 tatcccatagtggctgcctccctgattcaaccagacccctatcttggtgtcctgaatcct 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatcccatagtggctgcctccctgattcaaccagacccctatcttggtgtcctgaatcct 740

                                                                     
Query: 536 tccacacgcccgtctccctctgatgcctcaccaccatagaaggagcctgacttccagt 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tccacacgcccgtctccctctgatgcctcaccaccatagaaggagcctgacttccagt 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 998
Length adjustment: 10
Effective length of query: 583
Effective length of database: 988
Effective search space:   576004
Effective search space used:   576004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)