BAC Information

Click to search

BAC

Clone NameMSMg01-501F10
Chromosome14 (Build37)
Map Location 103,130,419 - 103,130,932
singlet/doubletsinglet
Overlap genenone
Upstream geneLmo7, LOC100043795, LOC545567, LOC669278
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501F10.T7 (MSMg01no501_f10.b1)MSMg01-501F10.TJ (MSMg01no501_f10.g1)
ACCAG576958AG576959
length697705
length of high quality
(start - end)
212 (14 - 225)515 (57 - 571)
definitionCHROMAT_FILE: MSMg01no501_f10.b1 PHD_FILE: MSMg01no501_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:09 2005CHROMAT_FILE: MSMg01no501_f10.g1 PHD_FILE: MSMg01no501_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTTTTCGGAGAGGATCCGCGGAATTCTTTGTTTACCTCTGAGCC
CCATTAAGGATGTTGAACATTTTTTTCCATTTTTTATTAGGTATTTAGCT
CATTTACATTTCCAATGCTATACCAAAAGTTCCCCACACCCACCACCACC
ACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCC
CTGTACTGGGGAAATGTGGGACATTTACTCAATGGAGCACTACTCAGCTA
TGAAGAAGAATGAATTTCATGAAATTCCTAGCCAAATGGATGGATCTTTT
TTTTATCATCCTGAGTGAGGTAACACATGTCGCAAAGGAACTCACACAAG
ATGTACTCACTGATAAGTGGAGATTAGTCCCGAAACTTAGGATACCCAAG
ACAGAAGATACAATTTGCTAAGGACGTGAAACTCAAGATGAGCAAAGACC
AAAGTGCGGACACTTTGTCCCTTCTTAGAATTGGGAACGAACCACCCATG
GAAGGAGTTACAGAGACATAATTTGGGAGCTGGGGACAAAAAGATGGACC
ATCTAAGTGATTGCCATATCCCGATATCCATCCCCGTAATCCGGTTTCCA
AAGGTTGTAAACCTCTGCGTACCCCTAGGTAGGATTCTGGCTTTTTGTAT
CTAAAATATATCTGATTCCATAGGAAAACTATGAATGGGTTTCTATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCTAATGTGCTTTAAATCAGGCCTGCAAGCTCACATGAGTGTCT
CTATCTTGGTAATGTGAGACCCTAGAATGGTGAACTTCTGCAGAATAAAA
TTCTCTTTGAGTTTACAACCTGTAGTTATACTAGAAACATGAGAAAACAT
CTTGTTTTTACTAAGTTTCACATGTCATGAATATTTTATATTTTGCTGAT
ATGGTTAAAATGCAACCTTAGCTTTCACTTTTCTAGATAGGCATTGTGTG
TTCATTGGCCAGTAAGGTTTCATCTTTTGTAAACTGCTAATTTACCCTTT
GTCCACTTATTCATCTGTTATTTTTAAATTCAGAAACATTCTTTTTGCTT
ATGAAATATAGTATCCTATCAGAGCCAAACTGTTTCCCATTTTATCATGT
GTCTTTTCTTTATAGTGGATTTACTATATGTTTTTATTGTACAAAGACTA
AGTATGTCTGTTTAAATTTATGACTGGGTGGACAGAGGAGGTCCTACCTG
AGCAACTCTTGAAACTGGTAGATGCCAGGAGAGGAAAAATCAGTTTCTTT
CATGAAGTTGCCTCTGGCANGTCAACCATGCCCCAGTGGAAATCACACAT
CTTTGCATACATGGGCAGCATAAATGGGTCCTGGGTGGATGAAAAAAAAA
GAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_f10.g1 MSMg01no501_f10.g1 CHROMAT_FILE:
MSMg01no501_f10.g1 PHD_FILE: MSMg01no501_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:09 2005
         (515 letters)



>mm_chr14_103130108_103131021
          Length = 914

 Score =  903 bits (467), Expect = 0.0
 Identities = 503/517 (97%), Gaps = 5/517 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaatgtgctttaaatcaggcctgcaagctcacatgagtgtctctatcttggtaatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 825 cctaatgtgctttaaatcaggcctgcaagctcacatgagtgtctctatcttggtaatgtg 766

                                                                       
Query: 61  agaccctagaatggtgaacttctgcagaataaaattctctttgagtttacaacctgtagt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 765 agaccctagaatggtgaacttctgcagaataaaatactctttgagtttacaacctgtagt 706

                                                                       
Query: 121 tatactagaaacatgagaaaacatcttgtttttactaagtttcacatgtcatgaatattt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tataccagaaacatgagaaaacatcttgtttttactaagtttcacatgtcatgaatattt 646

                                                                       
Query: 181 tatattttgctgatatggttaaaatgcaaccttagctttcacttttctagataggcattg 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 645 tatattttgctgatatggttaaagtgcaaccttagctttcacttttctagataggcattg 586

                                                                       
Query: 241 tgtgttcattggccagtaaggtttcatcttttgtaaactgctaatttaccctttgtccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgtgttcattggccagtaaggtttcatcttttgtaaactgctaatttaccctttgtccac 526

                                                                       
Query: 301 ttattcatctgttatttttaaattcagaaacattctttttgcttatgaaatatagtatcc 360
           ||||||||||   ||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ttattcatct---attttttcattcagaaacattctttttgcttatgaaatatagtatcc 469

                                                                       
Query: 361 tatcagagccaaactgtttcccattttatcatgtgtcttttctttatagtggatttacta 420
           |||||||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||
Sbjct: 468 tatcagagccaaactgtttctcattttatcatttgtcttttctctatagtgggtttacta 409

                                                                       
Query: 421 ta--tgtttttattgtacaaagactaagtatgtctgtttaaatttatgactgggtggaca 478
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tacgtgtttttattgtacaaagactaagtatgtctgtttaaatttatgactgggtggaca 349

                                                
Query: 479 gaggaggtcctacctgagcaactcttgaaactggtag 515
           |||||||||||||||||||||||||||||||||||||
Sbjct: 348 gaggaggtcctacctgagcaactcttgaaactggtag 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space:   456520
Effective search space used:   456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)