BAC Information

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BAC

Clone NameMSMg01-501I19
Chromosome14 (Build37)
Map Location 97,375,234 - 97,375,888
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501I19.T7 (MSMg01no501_i19.b1)MSMg01-501I19.TJ (MSMg01no501_i19.g1)
ACCAG577118AG577119
length750726
length of high quality
(start - end)
655 (69 - 723)318 (316 - 633)
definitionCHROMAT_FILE: MSMg01no501_i19.b1 PHD_FILE: MSMg01no501_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:24 2005CHROMAT_FILE: MSMg01no501_i19.g1 PHD_FILE: MSMg01no501_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTAAAATAACGTCAATTTGTAACTAAAAGCAAATTGCATGTATTG
AATCTTCAAAACCTTACTAGTTAAGACAAATTTGGATTTGTCTATTAAAG
TAAGATAACAGGAAATATATCCTTTACTTTGTTCACACTACTCATACATA
GTAACAAATGTGTTTGGATCCTAAAGTTCCCTGAATTAAAATTTCTGCTC
TATTTATCGATTGGTATCTTGCATAGAAAATGGACTGTGTCAATAATAAA
ACCAATGATATGTCAAGCTAGAAGATATACTTTACTTGAAAGGTTGTTCA
GCATTTGGACAGACATTCCTCTATGATTTTGTATTTGTATTTCATCTTGA
CAAAGTTCTAACCTATCAATAATTCTGGAGATTGAACTAAATTTCCATTT
TTGTGTATAACGAGTTTGTTATTATTTGTTTGATATTGGTTAATATTGTT
TAAATATGTTTGATATTGAGCAGTGGCTGACAGAAAACAAAGTTGCTACA
GTTTGTCTTTTGTGCCTAGTGAGCGGTATGAAGAATATTTAGACCAATGA
TATGCATGTGGTGCTGTCATTGTGGAAGTGATGGACACTGGGAGAGTGGA
AAGTTAAATGGGAACACATCAGTTGGTACTTTGGTTTTGATAACATCATT
TAGCTTAAAGTGGAAAATTGTTATTTCACACTAGAGGGGATTTCTGATTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXATGAAATTCTTAGGCAAATGGATGGAACTAGAAAATATCATC
CTGAGTAAGGTCACCCAGTCACAAAAGAACACACATGGTATTCACTCACT
GATAAGTGTTTATTAGCCCAAAACCTTGTAATATCTAAGATACAATTCAC
AGACTACCTGAAGATCAAGAAGAAGAAAGACCAAAGTGTGAATGCTTCAG
TCCTTCTTAGAAGGGGAAACAAAATACTCAAGGGAAGAAACATGGAAGCA
AAATGTGTTATTTGAAACTGTAGGAAAGGCCATCCAGAGACTGCCCCATG
TGGGGATCCATCCCATATACAGTCACCAAACCCAGTGCATACTGACAGGA
GCCTGATAAAGCTGTCTCCTGAGAGGCTCTGCCAGAGCCTGACAAATACA
GAGGTAGATGCTTGCAGATTGGACTGAGATCAAGTTCCCCAATGGAGGAG
TTAGAAAAAAGGACTGAAGGAGCTGAAGAGGTTTGCAACCTCATAGGAAG
AAAAATAATATCAACCAACCAGACAGCCACAGAGCTCCCAGAGACTAAAC
CACCAAACAAAGAATACACATTGGGGGAACCATAGCTCCAGTTGCATATG
CAGCAGAGGATGGCCTTGGCAGGCATCACTGGGAGGAGAAGCCCTTAGTC
CCTGTGAGGGTAGATGCTTCAGTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_i19.b1 MSMg01no501_i19.b1 CHROMAT_FILE:
MSMg01no501_i19.b1 PHD_FILE: MSMg01no501_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:24 2005
         (655 letters)



>mm_chr14_97375034_97376088
          Length = 1055

 Score = 1266 bits (655), Expect = 0.0
 Identities = 655/655 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttgtaactaaaagcaaattgcatgtattgaatcttcaaaaccttactagttaagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttgtaactaaaagcaaattgcatgtattgaatcttcaaaaccttactagttaagaca 260

                                                                       
Query: 61  aatttggatttgtctattaaagtaagataacaggaaatatatcctttactttgttcacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttggatttgtctattaaagtaagataacaggaaatatatcctttactttgttcacac 320

                                                                       
Query: 121 tactcatacatagtaacaaatgtgtttggatcctaaagttccctgaattaaaatttctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactcatacatagtaacaaatgtgtttggatcctaaagttccctgaattaaaatttctgc 380

                                                                       
Query: 181 tctatttatcgattggtatcttgcatagaaaatggactgtgtcaataataaaaccaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctatttatcgattggtatcttgcatagaaaatggactgtgtcaataataaaaccaatga 440

                                                                       
Query: 241 tatgtcaagctagaagatatactttacttgaaaggttgttcagcatttggacagacattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgtcaagctagaagatatactttacttgaaaggttgttcagcatttggacagacattc 500

                                                                       
Query: 301 ctctatgattttgtatttgtatttcatcttgacaaagttctaacctatcaataattctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctatgattttgtatttgtatttcatcttgacaaagttctaacctatcaataattctgg 560

                                                                       
Query: 361 agattgaactaaatttccatttttgtgtataacgagtttgttattatttgtttgatattg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agattgaactaaatttccatttttgtgtataacgagtttgttattatttgtttgatattg 620

                                                                       
Query: 421 gttaatattgtttaaatatgtttgatattgagcagtggctgacagaaaacaaagttgcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttaatattgtttaaatatgtttgatattgagcagtggctgacagaaaacaaagttgcta 680

                                                                       
Query: 481 cagtttgtcttttgtgcctagtgagcggtatgaagaatatttagaccaatgatatgcatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtttgtcttttgtgcctagtgagcggtatgaagaatatttagaccaatgatatgcatg 740

                                                                       
Query: 541 tggtgctgtcattgtggaagtgatggacactgggagagtggaaagttaaatgggaacaca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtgctgtcattgtggaagtgatggacactgggagagtggaaagttaaatgggaacaca 800

                                                                  
Query: 601 tcagttggtactttggttttgataacatcatttagcttaaagtggaaaattgtta 655
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcagttggtactttggttttgataacatcatttagcttaaagtggaaaattgtta 855


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space:   674025
Effective search space used:   674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)