BAC Information

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BAC

Clone NameMSMg01-502E10
Chromosome14 (Build37)
Map Location 109,649,893 - 109,814,721
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502E10.T7 (MSMg01no502_e10.b1)MSMg01-502E10.TJ (MSMg01no502_e10.g1)
ACCAG577669AG577670
length729748
length of high quality
(start - end)
622 (45 - 666)631 (73 - 703)
definitionCHROMAT_FILE: MSMg01no502_e10.b1 PHD_FILE: MSMg01no502_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:16 2005CHROMAT_FILE: MSMg01no502_e10.g1 PHD_FILE: MSMg01no502_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,649,893 - 109,650,511)(109,814,091 - 109,814,721)
sequence
CTACCTGTCAGAAGAGGATCCGCGGAATTCTGTTTCCTCCTCAAGTGAGC
TTTGCCCAGAAAGGTCTAATGTTTTAATCCATCATTTCTAAATTGCTGTT
TTATAGATGTGGGTTACAAGTTAGCAGCACTTAGCTGTCTTTACTGCTTA
CATCTTCCAAGAGTTATGCTAACAAATAAATAATGCTTTGTTTAAGTCTT
ATGCACTAAATGTAAGGGATTGAACCATTTTAATCTTTTGAATCACCGTA
ATATTCAGTAAATCTAGAGCTCCTTTGTATACTTGCTTATATTTTATCCA
AGGTAGTATCAAACAGTATTATGTTTGTTGATACTGGTTTTCAGTCAATT
CAATTCAACTCTAACAGACAGTATATGCTTCTACTTAATTGTATTTATTA
ATGCAACAATTTAGATAAGTACTATGCACTCTTACTCTTTGACATTGTTC
TTTGTTAGTACAGCTATGAAATAAAGCATTCTATGTAGGAAGAATTCAAA
ACCAAGTAAACTAGTAATATTACAGCAGATGAAAGAATCAAAGTATAAGC
TTGTAAAGACAGATTGGGAAAAGTCAGTCTTCAATGATATATAGGTAAAC
TAATAAGAAGAAACAACTGTTTTCATCCCTAGTCACGAATTGAGAGCATT
GAACTATTATTAACAAGTGTAAAACTTAAGGTAAACTCCAAGAAAAAGGC
ATTGGGGAACTTGTAAATGAAAGAGAAAG
CATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGACTCACGAAATTCATCCGAGGTGAGAATGATCAACTTAT
GCTGTATAACTTACCATTATTTTCACATAACAAGTTGATGTAGACATGAC
TGAGCAGGCTACTTGCATGAGGATTCCTACTGGTATAAAATATCAGGATG
AAACATGGTAAAATGCATATTTCATAGAATCCAGTCAATAATCCCCTAAC
TATATCCTCAAATTTGACAGAAGGGACATGGTTCTAGTCGAAAACCAAAC
AAGAATTTTCTAATTTTTTTTGAGTTCCATTCCTTATCATTAGTGCCTAT
GTCTTTTTTCATAGAAAAATTATTTAAAGCAGCCTGAACTACAAATAAGG
TAGTATCTTTGATTGAAGGAGGAAATTCTAAATACTAGGTGTTCCACTTG
TAAATATAGCTTCATTAGATGTAGGATGTATAAGACAATACTTTATGTTA
ACAAGGTGGGACACTCACCTGCATATTTCTTTCTTTAAAGAGGAGAGCTA
AGGTGTTTATATATTTCTCTAGAAGCTGGAGCAGATAATACATTTCATTT
TCCTCCAGGTCCTCCAGAAAGAAGGACCACCCATTAAACAGTCATGTGAA
ATGGAACCAGTAAGAGACTTTTCACTTTTAATGTTCAGAATTGGATATTA
ATAAATCTGTTTGCTCTCTGCTTTTTATAATTTATTTATGAGAACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_e10.b1 MSMg01no502_e10.b1 CHROMAT_FILE:
MSMg01no502_e10.b1 PHD_FILE: MSMg01no502_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:16 2005
         (622 letters)



>mm_chr14_109649693_109650714
          Length = 1022

 Score = 1127 bits (583), Expect = 0.0
 Identities = 610/619 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgagctttgcccagaaaggtctaatgttttaatccatcatttctaaattgctgttttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgagctttgcccagaaaggtctaatgttttaatccatcatttctaaattgctgttttat 260

                                                                       
Query: 61  agatgtgggttacaagttagcagcacttagctgtctttactgcttacatcttccaagagt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgtgggttacacgttagcagcacttagctgtctttactgcttacatcttccaagagt 320

                                                                       
Query: 121 tatgctaacaaataaataatgctttgtttaagtcttatgcactaaatgtaagggattgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tatgctaacaaataaataatgctttgtttaagtcttatgcactaaatgtaaggaattgaa 380

                                                                       
Query: 181 ccattttaatcttttgaatcaccgtaatattcagtaaatctagagctcctttgtatactt 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccattttaatcttttgaatcactgtaatattcagtaaatctagagctcctttgtatactt 440

                                                                       
Query: 241 gcttatattttatccaaggtagtatcaaacagtattatgtttgttgatactggttttcag 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttatattttagccaaggtagtatcaaacagtattatgtttgttgatactggttttcag 500

                                                                       
Query: 301 tcaattcaattcaactctaacagacagtatatgcttctacttaattgtatttattaatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaattcaattcaactctaacagacagtatatgcttctacttaattgtatttattaatgc 560

                                                                       
Query: 361 aacaatttagataagtactatgcactcttactctttgacattgttctttgttagtacagc 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 aacaatttagataagtactatgcactcttactctttgacattgttctttgttagtaaagc 620

                                                                       
Query: 421 tatgaaataaagcattctatgtaggaagaattcaaaaccaagtaaactagtaatattaca 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgaaataaagcattctatgtagaaagaattcaaaaccaagtaaactagtaatattaca 680

                                                                       
Query: 481 gcagatgaaagaatcaaagtataagcttgtaaagacagattgggaaaagtcagtcttcaa 540
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 gcagatgaaagaatcaaagtataagcttgtaaagacagatggggaaaagtcagtcttcaa 740

                                                                       
Query: 541 tgatatataggtaaactaataagaagaaacaactgttttcatccctagtcacgaattgag 600
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 741 tgatatataggtaaactaataagaagaaacaactcttttcatccctagtcacaaattgag 800

                              
Query: 601 agcattgaactattattaa 619
           |||||||||||||||||||
Sbjct: 801 agcattgaactattattaa 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no502_e10.g1 MSMg01no502_e10.g1 CHROMAT_FILE:
MSMg01no502_e10.g1 PHD_FILE: MSMg01no502_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:16 2005
         (631 letters)



>mm_chr14_109813891_109814921
          Length = 1031

 Score = 1112 bits (575), Expect = 0.0
 Identities = 617/631 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatccgaggtgagaatgatcaacttatgctgtataacttaccattattttcacataaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tcatccgaggtgagaatgatcaacttatgctgtataacttaccattattttcacataaca 772

                                                                       
Query: 61  agttgatgtagacatgactgagcaggctacttgcatgaggattcctactggtataaaata 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 771 agttgatgtagacatgactgagcaggctacttgcatgaggcttcctactggtataaaata 712

                                                                       
Query: 121 tcaggatgaaacatggtaaaatgcatatttcatagaatccagtcaataatcccctaacta 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 711 tcaggatgaaacatggtaaaatgcagatttcatagaatccagtcaataatcccctaacta 652

                                                                       
Query: 181 tatcctcaaatttgacagaagggacatggttctagtcgaaaaccaaacaagaattttcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 651 tatcctcaaatttgacagaagggacatggttctagtcgaaaaccaaacaagaattctcta 592

                                                                       
Query: 241 attttttttgagttccattccttatcattagtgcctatgtcttttttcatagaaaaatta 300
           |   | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 591 aaaatatttgagttccattccttatcattagtgcctatgtcttgtttcatagaaaaatta 532

                                                                       
Query: 301 tttaaagcagcctgaactacaaataaggtagtatctttgattgaaggaggaaattctaaa 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 531 tttaaagcagcctgaactacaaataaggcagtatctttgattgaaggaggaaattctaaa 472

                                                                       
Query: 361 tactaggtgttccacttgtaaatatagcttcattagatgtaggatgtataagacaatact 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 471 tactaggtgttccacttgtaaatatagcttcattaaatgtaggatgtataagacaatact 412

                                                                       
Query: 421 ttatgttaacaaggtgggacactcacctgcatatttctttctttaaagaggagagctaag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 411 ttatgttaacaaggtgggacactcacctgcatatttctttctttaaagagaagagctaag 352

                                                                       
Query: 481 gtgtttatatatttctctagaagctggagcagataatacatttcattttcctccaggtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtgtttatatatttctctagaagctggagcagataatacatttcattttcctccaggtcc 292

                                                                       
Query: 541 tccagaaagaaggaccacccattaaacagtcatgtgaaatggaaccagtaagagactttt 600
           ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 291 tccagaatgaaggaccacccattaaacagacatgtgaaatggagccagtaagagactttt 232

                                          
Query: 601 cacttttaatgttcagaattggatattaata 631
           |||||||||||||||||||||||||||||||
Sbjct: 231 cacttttaatgttcagaattggatattaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)