BAC Information

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BAC

Clone NameMSMg01-502G17
Chromosome14 (Build37)
Map Location 96,904,923 - 96,905,542
singlet/doubletsinglet
Overlap geneKlhl1
Upstream gene4921530L21Rik
Downstream geneLOC100043366, LOC668654
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502G17.T7 (MSMg01no502_g17.b1)MSMg01-502G17.TJ (MSMg01no502_g17.g1)
ACCAG577778AG577779
length739776
length of high quality
(start - end)
432 (36 - 467)620 (73 - 692)
definitionCHROMAT_FILE: MSMg01no502_g17.b1 PHD_FILE: MSMg01no502_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:27 2005CHROMAT_FILE: MSMg01no502_g17.g1 PHD_FILE: MSMg01no502_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
GTATTTCTAACCATGCAAGTGAAAGGTCTATATGACAAGTACTTCAACTC
TCTGAAGAAAGAAATCGAATACCTTAGAAGGTGCTAGCAGCTAACCTTTG
GACTGAGCACAGGGTCCCCAATGGAGGAGCTAGAAAAAGAACCAAAGGAG
CTGAAGGGGTTTGCTGCCCCATAGAAGTAACAACAATAACCAGTACCCCC
AGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTACACATGGAGAGACC
CATGGCTCCAGCTGCATTGGTAACAGAGGATGGTCTTGTAGGTCATCAAT
AGGAGGAGAGACCCTTGGTCCTGTGAAGGCTCGATGCCCCAGTGTAGGGT
AATGCCAGCATAGGGAAGCAGAAGTGGGTGGGTTGGTGAGCAGGGGGGCG
GGGGGGGGAGATGGGATANNGNNNNNNNNNTTGNNNNNNNGNNNNNNNNN
NTTGGNGGNNGGGNGGGGTGNGNTTTGGTTTTGTTGTTTGGTTTTTNGTT
TTTGTGGTTTNTTTTTTGGGTTTTTGTTNTGTTTGTGTGGGGGGTNTTTT
TGGTTTTTTGTTGNNTTTTTTTTGGGTTGTGTGNTGGTTTTTTTTGTTTG
GTTGTGGTTTTTTTGTTGTGGTTGGGTGTTTTTTTTTTTGTTTGTTTGTG
GTTTTTGGTTGTTGGTTTTTTTGGTGGTTTTTGTGTGTT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGAATACTGAGATGTATTGCTTAAGG
AAAATTAAGTTTCAAAACAAGAAATTGTGCACTGTGGTTTGAGTCTTGGA
ATGACAACAAACATTTACACTACTGACCTTATAACATCATCTAAAGTAGT
TTTATCTTTTTACTTTGGGAACCAATTTTGCACAAGTTAGAGATCCATTG
ACATTATATTTATTTTCATTTAATATATTTCTTAAGGGGTTCAAGATAAA
ATCTCCAAAAACAGAAAATGTTCATCAACATTGCATGCACCAGCGCTTCA
GAAAAAAAGTTGAACTTTCAAGTGAAGTTTCATGGAGGAGGCAAAAGAGT
TGAAAAGCCAAATGGAAGGAAGATACTGAACACAACACATGAAAACCAAC
CAGTGCAGCAGCAAAACAAAACAAAAAATAAAAATAAAACAAATTCAAGA
TCCTTTAAATAAACATTTATAAAGCTCATCTGAAGTCACATAGAACAAAG
AAGCATACACAGGGCATGACTAGATCTGCACCAGATCTTCTGTATATATG
TCATGACTTCCAGCCTACTGTTTACATGGTACACCAGAATGCAAGAATGA
GTGGGTTTCTATCACACCTTCTACTGGGTTCCTTCCCTTAATATCTGAGT
CCTTTCTTCACACATAGAGTTAATAAAATATAAAAAAAGAATTTACAGCA
GTTTGTACTTAAACATAANGTACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_g17.g1 MSMg01no502_g17.g1 CHROMAT_FILE:
MSMg01no502_g17.g1 PHD_FILE: MSMg01no502_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:27 2005
         (620 letters)



>mm_chr14_96904712_96905731
          Length = 1020

 Score = 1199 bits (620), Expect = 0.0
 Identities = 620/620 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagaatactgagatgtattgcttaaggaaaattaagtttcaaaacaagaaattgtgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tcagaatactgagatgtattgcttaaggaaaattaagtttcaaaacaagaaattgtgcac 772

                                                                       
Query: 61  tgtggtttgagtcttggaatgacaacaaacatttacactactgaccttataacatcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgtggtttgagtcttggaatgacaacaaacatttacactactgaccttataacatcatct 712

                                                                       
Query: 121 aaagtagttttatctttttactttgggaaccaattttgcacaagttagagatccattgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aaagtagttttatctttttactttgggaaccaattttgcacaagttagagatccattgac 652

                                                                       
Query: 181 attatatttattttcatttaatatatttcttaaggggttcaagataaaatctccaaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 attatatttattttcatttaatatatttcttaaggggttcaagataaaatctccaaaaac 592

                                                                       
Query: 241 agaaaatgttcatcaacattgcatgcaccagcgcttcagaaaaaaagttgaactttcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agaaaatgttcatcaacattgcatgcaccagcgcttcagaaaaaaagttgaactttcaag 532

                                                                       
Query: 301 tgaagtttcatggaggaggcaaaagagttgaaaagccaaatggaaggaagatactgaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgaagtttcatggaggaggcaaaagagttgaaaagccaaatggaaggaagatactgaaca 472

                                                                       
Query: 361 caacacatgaaaaccaaccagtgcagcagcaaaacaaaacaaaaaataaaaataaaacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caacacatgaaaaccaaccagtgcagcagcaaaacaaaacaaaaaataaaaataaaacaa 412

                                                                       
Query: 421 attcaagatcctttaaataaacatttataaagctcatctgaagtcacatagaacaaagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 attcaagatcctttaaataaacatttataaagctcatctgaagtcacatagaacaaagaa 352

                                                                       
Query: 481 gcatacacagggcatgactagatctgcaccagatcttctgtatatatgtcatgacttcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gcatacacagggcatgactagatctgcaccagatcttctgtatatatgtcatgacttcca 292

                                                                       
Query: 541 gcctactgtttacatggtacaccagaatgcaagaatgagtgggtttctatcacaccttct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gcctactgtttacatggtacaccagaatgcaagaatgagtgggtttctatcacaccttct 232

                               
Query: 601 actgggttccttcccttaat 620
           ||||||||||||||||||||
Sbjct: 231 actgggttccttcccttaat 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)