BAC Information

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BAC

Clone NameMSMg01-503F24
Chromosome14 (Build37)
Map Location 98,170,709 - 98,222,088
singlet/doubletdoublet
Overlap geneDach1
Upstream geneLOC668654, EG668659
Downstream geneLOC635593, LOC619716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503F24.T7 (MSMg01no503_f24.b1)MSMg01-503F24.TJ (MSMg01no503_f24.g1)
ACCAG578506AG578507
length730735
length of high quality
(start - end)		167 (72 - 238)480 (65 - 544)
definitionCHROMAT_FILE: MSMg01no503_f24.b1 PHD_FILE: MSMg01no503_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:38 2005CHROMAT_FILE: MSMg01no503_f24.g1 PHD_FILE: MSMg01no503_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,221,925 - 98,222,088)(98,170,709 - 98,171,188)
sequence
CCCTTTATTTTNNTTACCTTTTTTNTTTTTXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCCAGGATCCGCGGAATTCATACACATATTCAGTTTTTA
TATGGTTTACGTGTAGTCAAAAACTATGGTCCCAAACTTCACTCTACTAT
CACTTTCAAATATATGTATGCTGTATATATACAAACATGATAGTTTTATT
AGTGTAAATCCTCTGCACATGGTATTCTCTCTCACTAGGCAATAACACCA
TTTTTAAAATATTTTTCTTTCTAATTCTTTTTAATTTTATTTATTATTTT
ATAGTCCAGATTTTATCCCTCCCAATCACCCTCTGACTGTTCCTATCCCG
TACCACCTGCCACCCCCCATCTCCTCAAGAATTATTCCTCCCCTCTTAAC
CCCTTTTCCCCCCAAAGGGCCCCCCCCCCTAGGCCCCCCCACCCCCCGGG
GTAAAGAAAAAATCTCCCTTTTTAAAAACAAACCGGGAAATGTTCCCCCC
CGAAAATTTGGGGGGGAAAACACACAAACACCGGGGAAAATCTTTCTCGG
GGGGGGGGCCAAATTTTTTAAAAAAAATTTTGGGCCCCCCTTTATTTAAA
AAAACGGGCCCTTTTCCCCAAAAAGGGGTGCGCCTCCCTCCACACATTTT
TCCCAACCTTCTCCCAAATAAAACAAAGGGGGGCCCCAGCTTCTTTCCCA
TTGGTTGGGTGGTAGAAATCTGCCTCTTGA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXGCTTTATGTTACTGTGCCAATCTGCTGTGTGACTTA
TATGGATCCTTTCTGATAACAATCTGGAGGTATTCTTAGGAACATACACG
TGGTTTGCCTCATGTTTTTATATTTCTTGATTTTGCTTCATATTCACTAT
CTAAATTGTCAAAACTGCATATGTGACTATTTGCCTGAGATAGTTTTCCT
ATATAATCACTGAATGGTCTCTGAAGCATGAGTGTATCTAATTCAATGTC
AGACTATATCTATTACTATGGTTTCATAAATTGCATCTCATAATGATGTC
ATATCAATCTTTGATTTTGTAAGTATCCTGTATGATGTTCATATAAAAAT
GAAATCACCCAATGACTCATTTCTCGGAACACAGTCTCATCGTTAAGAGA
CACATGATCAAAATAAAATAACCTCTTGTAAATCTCAAAATACTTAAAAA
CTATTAGTGCAATTAGTTGTATTTATGCCTTTGGTAAAAAGTACCACAAG
GAAGATTAGAAATAAAATTTTTAAAAATAAAAAGGAAGCAGAACACACAT
CCTAATAAATACCTGGGAACAAAATTTATATTTTATGCCAATGCAGTGTG
AGAACCCAAGCTGTTATGTTCCACATAAAGCAAGTAGCACTCTTGTGTCA
TCCCATTTGGGGAGATGTGAAGGGTAGACAGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_f24.b1 MSMg01no503_f24.b1 CHROMAT_FILE:
MSMg01no503_f24.b1 PHD_FILE: MSMg01no503_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:38 2005
         (167 letters)



>mm_chr14_98221722_98222288
          Length = 567

 Score =  317 bits (164), Expect = 2e-91
 Identities = 164/164 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcatacacatattcagtttttatatggtttacgtgtagtcaaaaactatggtccca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gaattcatacacatattcagtttttatatggtttacgtgtagtcaaaaactatggtccca 308

                                                                       
Query: 64  aacttcactctactatcactttcaaatatatgtatgctgtatatatacaaacatgatagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aacttcactctactatcactttcaaatatatgtatgctgtatatatacaaacatgatagt 248

                                                       
Query: 124 tttattagtgtaaatcctctgcacatggtattctctctcactag 167
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tttattagtgtaaatcctctgcacatggtattctctctcactag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no503_f24.g1 MSMg01no503_f24.g1 CHROMAT_FILE:
MSMg01no503_f24.g1 PHD_FILE: MSMg01no503_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:38 2005
         (480 letters)



>mm_chr14_98170509_98171388
          Length = 880

 Score =  928 bits (480), Expect = 0.0
 Identities = 480/480 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctttatgttactgtgccaatctgctgtgtgacttatatggatcctttctgataacaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctttatgttactgtgccaatctgctgtgtgacttatatggatcctttctgataacaatc 260

                                                                       
Query: 61  tggaggtattcttaggaacatacacgtggtttgcctcatgtttttatatttcttgatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaggtattcttaggaacatacacgtggtttgcctcatgtttttatatttcttgatttt 320

                                                                       
Query: 121 gcttcatattcactatctaaattgtcaaaactgcatatgtgactatttgcctgagatagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcatattcactatctaaattgtcaaaactgcatatgtgactatttgcctgagatagt 380

                                                                       
Query: 181 tttcctatataatcactgaatggtctctgaagcatgagtgtatctaattcaatgtcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcctatataatcactgaatggtctctgaagcatgagtgtatctaattcaatgtcagac 440

                                                                       
Query: 241 tatatctattactatggtttcataaattgcatctcataatgatgtcatatcaatctttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatctattactatggtttcataaattgcatctcataatgatgtcatatcaatctttga 500

                                                                       
Query: 301 ttttgtaagtatcctgtatgatgttcatataaaaatgaaatcacccaatgactcatttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgtaagtatcctgtatgatgttcatataaaaatgaaatcacccaatgactcatttct 560

                                                                       
Query: 361 cggaacacagtctcatcgttaagagacacatgatcaaaataaaataacctcttgtaaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cggaacacagtctcatcgttaagagacacatgatcaaaataaaataacctcttgtaaatc 620

                                                                       
Query: 421 tcaaaatacttaaaaactattagtgcaattagttgtatttatgcctttggtaaaaagtac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaaaatacttaaaaactattagtgcaattagttgtatttatgcctttggtaaaaagtac 680


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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