BAC Information

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BAC

Clone NameMSMg01-503J14
Chromosome14 (Build37)
Map Location 86,123,893 - 86,124,425
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629794, LOC668603
Downstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503J14.T7 (MSMg01no503_j14.b1)MSMg01-503J14.TJ (MSMg01no503_j14.g1)
ACCAG578678AG578679
length708704
length of high quality
(start - end)
432 (84 - 515)533 (60 - 592)
definitionCHROMAT_FILE: MSMg01no503_j14.b1 PHD_FILE: MSMg01no503_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:55 2005CHROMAT_FILE: MSMg01no503_j14.g1 PHD_FILE: MSMg01no503_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCACTTTTTCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXATATGCAAA
ACATCCGCGGATTCTCCTATATTCCCGCACTTCATATTCTTTGGTCAACA
TTGTCTTAGGGTTATTATTGATGTAGTGAAACATCATGACCCAAAGCAAG
TTGGGGAGTAAAGGGTTTATTTTGTTTATACTTGTATATTTATCATATAC
TTGCAGTTCATCATCATCTTAGGAAGTTAGGGCAGAAACTCAAACTATGC
AGGCTCCTGGAGGCAGAAGTAGACATAGAGCCCATGGAGGAGTATTGCTT
ACTGGAGTGCATCTAATGCCTTTCTGCTAACAAAACCCAGCACTACCAGT
CCTTGTGTGCTCTATCCAGAACAGGCTGGTCTATTCCCCATCAATCACCA
ATTAACAAAATGCTCTAAAGGTTTGCCTGTTCACACCCAGTCTTTTGAAA
GCATTTTCTCAATTGAAGTTCTGTCCTATCACATGACTAGAGTTTGTGTC
ATGTTGACATAAAACTAGCCAGCACGAACATCTTACATTATTTCCAGGCT
TATGGGATATACTACTATTTTGCAAAGATTTTTAGGTCTTCATTATTCTC
TGGAAAGTTGACTCTATAGGAAGAATTGGCATCTATGTTACACTTCTCCA
ATTTCCTCTCCAAGTACTAACTTTATATAATTTCCCCATGGTATCTTCTA
TATCAGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCATGAAAGAAGGCACAAAAAAGGAGAGAGAATTTATAGAAA
CAGTGCCTACTAAAAATATTCAATATGATTATAAGAGACTCAGCTAAGTG
AAGCAAATAAGGTAATTCATTACTACTTTTAACAATTCTCCTTTCAGAAG
AAAAAAACATATTGAATAATATTCCTGAAATAATTTAGCAATAAAGTCAC
ATGGTGAAAAGAAATATATATTTAAGCAGTCTTTGTGTTACACCAGAGCC
CACTGTCTTCTGGGAGGTTTCTAAATGCAATTCAATCAGTAGATATGTGT
CACTTGCATTCATTGTTACTTTCCAAATTTATTTTAGTCAGCAATTTTAT
GAGTAGGCTTACACAGTTAAACTCAGTATTTCACCCTGGCTCATTTATAA
AGAAAAAGCAAATATAGGCATAAAATCTCCATTCTTCTCATCTATACAAA
TCTATGGAATACCACACATTATGCAATAGAAACAACTAAATTTTACGTTA
ATATCCAGGAAATACAGAAGGTAGTTGTTGGTCTGGAAGGCACAACCTGG
AATATAGGCCATCCCTGATTATTTGCCTTTCCAAGCAGTATGCCACCTCT
TTCACAAGTTACTGTTTATTCAGTATAGATCACCCTATGTTCTAGATCAG
CTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_j14.g1 MSMg01no503_j14.g1 CHROMAT_FILE:
MSMg01no503_j14.g1 PHD_FILE: MSMg01no503_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:55 2005
         (533 letters)



>mm_chr14_86123693_86124625
          Length = 933

 Score = 1007 bits (521), Expect = 0.0
 Identities = 530/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaaagaaggcacaaaaaaggagagagaatttatagaaacagtgcctactaaaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 catgaaagaaggcacaaaaaaggagagagaatttatagaaacagtgcctactaaaaatat 674

                                                                       
Query: 61  tcaatatgattataagagactcagctaagtgaagcaaataaggtaattcattactacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tcaatatgattataagagactcagctaagtgaagcaaataaggtaattcattactacttt 614

                                                                       
Query: 121 taacaattctcctttcagaagaaaaaaacatattgaataatattcctgaaataatttagc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 taataattctcctttcagaagaaaaaaacatattgaataatattcctgaaataatttagc 554

                                                                       
Query: 181 aataaagtcacatggtgaaaagaaatatatatttaagcagtctttgtgttacaccagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aataaagtcacatggtgaaaagaaatatatatttaagcagtctttgtgttacaccagagc 494

                                                                       
Query: 241 ccactgtcttctgggaggtttctaaatgcaattcaatcagtagatatgtgtcacttgcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccactgtcttctgggaggtttctaaatgcaattcaatcagtagatatgtgtcacttgcat 434

                                                                       
Query: 301 tcattgttactttccaaatttattttagtcagcaattttatgagtaggcttacacagtta 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 433 tcattgttactttccaaatttattttagtcagcaattttatgagtaggtttacacagtta 374

                                                                       
Query: 361 aactcagtatttcaccctggctcatttataaagaaaaagcaaatataggcataaaatctc 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aacttagtatttcaccctggctcatttataaagaaaaagcaaatataggcataaaatctc 314

                                                                       
Query: 421 cattcttctcatctatacaaatctatggaataccacacattatgcaatagaaacaactaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cattcttctcatctatacaaatctatggaataccacacattatgcaatagaaacaactaa 254

                                                                
Query: 481 attttacgttaatatccaggaaatacagaaggtagttgttggtctggaaggca 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 attttacgttaatatccaggaaatacagaaggtagttgttggtctggaaggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)