BAC Information

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BAC

Clone NameMSMg01-503M06
Chromosome14 (Build37)
Map Location 72,073,694 - 72,074,155
singlet/doubletsinglet
Overlap genenone
Upstream geneXpo7, LOC668443, Dok2, Gfra2, LOC100043132, LOC100043136
Downstream geneLOC668477, LOC668482, LOC675957, Fndc3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503M06.T7 (MSMg01no503_m06.b1)MSMg01-503M06.TJ (MSMg01no503_m06.g1)
ACCAG578804AG578805
length794704
length of high quality
(start - end)
---461 (87 - 547)
definitionCHROMAT_FILE: MSMg01no503_m06.b1 PHD_FILE: MSMg01no503_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:08 2005CHROMAT_FILE: MSMg01no503_m06.g1 PHD_FILE: MSMg01no503_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCNCCNNNNNNNNNCCCCCCNNNNNNNNCCCCAAAAATNNCNNCCNCT
AAAAAAANTCACAATTTCAAAAAAAGGGGNGGNAATTAGGGGTTTTCATA
AAAAGAAATAAAAATATAGTAAGTNTAGTTTATAACTAATAAAGAATAAA
AAAAAAATAAAAAATATTTTTTAATATTTTATTTTTTTGGTTAATGTTTT
AAAAAANNNANNCTANAANNNNANNNNNNNANNNAAAAAGGNNNAAAANN
NCNNAAAAAANNNAAAAAAANNNNNNNNNNTNNNAAAAAAAAANNNNNNG
GGAAACNNNCNGNNCNNNNTNNNNNNNNCCCCNNNCTTTTTTTTAAAAAA
AACNCCNCACAAAAAANNNCCCCNCCCCCCCCCCCCCCCNCCCCCCCNCT
TTCAAAAAANAAAAAAAAAAAACNAAAAAAAAANANNCCCCCCCCCCCCC
CNCNNNNNNNNNCCNNCCCCCCCNCCCCCCCCCCCCCCCCCCCCNCCCCC
NNCCCNCCCCCAACCCACCAACCCCCCCCNAACCCCCCCCCCCCCNNCTT
CCCCCCCNCGCCCCTAAAAATCCCCCATCCCCCCCCNNNCCTCCCCCTTT
CACCCCNNNCNCNNCCCNNCCCCCCCTTCCCCCCCCCCCCTCCCTCTCCC
CCNNNCCCNCAACCTATTACCCCCNACCACCCCNCCCACCCCNTCTTAAC
CCCCCAAATNAACACATTTCCTTACCTTTTTTCCNCCCCCNNTAACCTTC
ACCCTTATCCCTTTAATTATTTAAAATATTTAAATAAAATAAAT
TGTTTTATTATCCGATGCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTACAACAAAATTCATGCATGTGTGCTTT
TATATGTATGAGTGTACAAATGTGTGTCTATAGTACTGTGACTGGGTATA
TGTGCCTGTACATGATTTTACATATGTGGGGAGGTATGTGTGTGTATGTG
TGTATATACCTGCAAACACAATGGACATTGAAATCTAGCTGAAATGCTCT
TTTAAAATTGCAAAGAATTCAAGGCTGAGAGTGGTTTCATTGTCTCATAT
CATAACAAGGGCTCCTGGGCACTTTTTTTCCATCCATTGGCCAGAGGACA
AGTAATGTTGGCATGGTTTACCTACCTTCTGGTGAAGGTGCCAGGGCCTA
TTTTTTCACTGACCATATTCTCTGTTTCTGTCTGAGAAAGAGGCCAGATG
GAGAAGGTCAGCTGAGGGGCAGCCATCCCCTGGGCTCTCCTCCAGTCTTT
CAGCTCTCTGTGATCATCGCAGCAAGGTGCTGTGCTTACCTTTAGTAAGG
TAAGGCTGCATATTCTGCAAAGGAATGCTGATAATGGCGGGTAAACTGGA
GGGGTTGGAGCCCATGCCTTTCCTAATATGATAAAATATGTTTTTTTTCT
ACCAATTACCCGCATGATAATAACGACAGTAATATAGTACACGGACTTTT
AAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_m06.g1 MSMg01no503_m06.g1 CHROMAT_FILE:
MSMg01no503_m06.g1 PHD_FILE: MSMg01no503_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:09 2005
         (461 letters)



>mm_chr14_72073373_72074234
          Length = 862

 Score =  812 bits (420), Expect = 0.0
 Identities = 451/466 (96%), Gaps = 9/466 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcatgtgtgcttttatatgtatgagtgtacaaatgtgtgtctatagtactgtgactggg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 783 tgcatgtgtgcttgtatatgtatgagtgtacaaatgtgtgtctatagtactgtgactgga 724

                                                                       
Query: 61  tatatgtgcctgtacatgattttacatatgtggggaggtatgtgtgtgtatgtgtgtata 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tttatgtgcctgtacatgattttacatatgtggggaggtatgtgtgtgtatgtgtgtata 664

                                                                       
Query: 121 tacctgcaaacacaatggacattgaaatctagctgaaatgctcttttaaaattgcaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 tacctgcaaacacaatggacattgaaatctagctgaaatgctcttttaaaattgcaaaga 604

                                                                       
Query: 181 attcaaggctgagagtggtttcattgtctcatatcataacaagggctcctgggcactttt 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | 
Sbjct: 603 attcaaggctgagagtggtttcattgtctcgtatcataacaagggctcctgggcactgt- 545

                                                                       
Query: 241 ttt-----ccatccattggccagaggacaagtaatgttggcatggtttacctaccttctg 295
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ---gccacccatccattggccagaggacaagtaatgttggcatggtttacctaccttctg 488

                                                                       
Query: 296 gtgaaggtgccagggcctattttttcactgaccatattctctgtttctgtctgagaaaga 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtgaaggtgccagggcctattttttcactgaccatattctctgtttctgtctgagaaaga 428

                                                                       
Query: 356 ggccagatggagaaggtcagctgaggggcagccatcccctgggctctcctccagtctttc 415
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ggccagatggagaaggtcagcagaggggcagccatcccctgggctctcctccagtctttc 368

                                                         
Query: 416 agctctctgtgatcatcgcagcaaggtgctgtgcttacctttagta 461
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 agctctctgtgatcatcgcagcaaggtgctgtgcttacctttagta 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 862
Length adjustment: 10
Effective length of query: 451
Effective length of database: 852
Effective search space:   384252
Effective search space used:   384252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)