BAC Information

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BAC

Clone NameMSMg01-503N07
Chromosome14 (Build37)
Map Location 124,696,856 - 124,697,207
singlet/doubletsinglet
Overlap geneFgf14
Upstream geneVgcnl1, Itgbl1, LOC668700
Downstream geneGA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503N07.T7 (MSMg01no503_n07.b1)MSMg01-503N07.TJ (MSMg01no503_n07.g1)
ACCAG578854AG578855
length721773
length of high quality
(start - end)
352 (85 - 436)43 (131 - 173)
definitionCHROMAT_FILE: MSMg01no503_n07.b1 PHD_FILE: MSMg01no503_n07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:13 2005CHROMAT_FILE: MSMg01no503_n07.g1 PHD_FILE: MSMg01no503_n07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTTATCCNTCTAAAATTGCGGCGCTATACGACTACTATATTCAGAAAG
GGGCNGGAATCATGCTGTTACCCCATAAGTGTAATTTCACTATCATATCT
TGGAAGTGTTGTTCAGTTGCATATGTTCACTACCTTTGTCCCTCTGGCCT
TAAAGTCTTCCAACTTTCCTCTTTGGGGTTTCAATTCTTATGTCTTTATG
CAAACTGCAAATTTTCTCCACCTTTTCTATAGTATAGTTTAGCTCTGCCA
TCTCTATCTATTAGATCACTCCAAAGGAAGGCAGAGGGGAAGCAAAAACT
TGTCTGTTAAAATGGTAGCATAAATTCTTTTTCTTTCCTTTTCCTATCCT
AGATGCTATGGTATGAATGTTTATGTAGTCTATGCACAAAGTTGTTAAAA
GTTAATCACAAATATGACTAAGAGGTGGGCCCTGAGAATGGTGATTAGGC
CTTGAAGATTTGGGTATTTTTATGATAGAGGCTCAAAGGACCTTCTTCCC
CTTCCACCATGCAAGGACTCAGAGAATGCACCATCTATAAATAATTATGT
AAGCCTTCATCATACAGAAAGTCTACTGATAATTTAATACTGAATTTTAG
GGCTTCTGGGAAAATATTATAACCAAACCTAAAGTGGTTATAAACTATCT
GGATCATGACATTTTGCTATAGGTATCTGAACTAACTGAAAGATTTCTCT
AGTGCTTTATGTTTTATCTTG
TCGAGAAANNAAGNNNNNAACCAANAAATTTTNNNNNNNNNNNNNNNNCN
NNNNNNNNNCCAATNAAANGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTGGGAGAACGGTCTATTG
ACAATGAAAACAATAACAGCTTAAAGGAAGAGACCTCTGTAGTGCTTCAA
TAAAGAGTGATGGGAGTTGGAACTCAAGTGAAATCAGGAAATTGTGACTT
TTTTTCTGAAAGGTAGAACCTTAATAAAACTCCCTTGTGGCATCTTTTGG
TAAAAAAAAGATTTCCCTCCAAACAAATCTGAATACCAATTTCCAAAAAC
TTACCCAATTTCCCCGCTTACCTAGTAATTTTATTCCCCCGGTATAAAAC
CCTTAAAAATTTCTTGGCCTTTTAAACTTCTGAAACCTAAAATGGGTTGG
GGCAAAACCTCCCATTTTTAAAATCCAAAAAAAAAAGGGGCACCTGGGAG
GGGCCCCCCAAATAACCGGGTTAAAAAAAAACACGTTTTTTTTTTTTTTC
TTTAAAAAACCCCCCCCCCTTTTTATTTTTGGGATTAGGGGTTTTTACCA
CCCCAAAATAGGGGATATTTTTTGAAAAACCACCCCTTAGGGAGGGGGGC
TTTTCTCCCCCGGGTGGGTTAACTTTTTTTTTTTTCTTTCCCCACAGGTG
GGAAAATTTTTTTTTGGGTTCCCTCCCAAATTTTGCCCCCACCCCCCTTC
CCTAGGTGAAAAAAAACCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_n07.b1 MSMg01no503_n07.b1 CHROMAT_FILE:
MSMg01no503_n07.b1 PHD_FILE: MSMg01no503_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:13 2005
         (352 letters)



>mm_chr14_124696656_124697407
          Length = 752

 Score =  658 bits (340), Expect = 0.0
 Identities = 349/352 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcactatcatatcttggaagtgttgttcagttgcatatgttcactacctttgtccctc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 tttcactatcatatcttggaagtgttgttcagttgcagatgttcactacctttgtccctc 260

                                                                       
Query: 61  tggccttaaagtcttccaactttcctctttggggtttcaattcttatgtctttatgcaaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tggccttaaagtcttccaactttcttctttggggtttcaattcttatgtctttatgcaaa 320

                                                                       
Query: 121 ctgcaaattttctccaccttttctatagtatagtttagctctgccatctctatctattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcaaattttctccaccttttctatagtatagtttagctctgccatctctatctattag 380

                                                                       
Query: 181 atcactccaaaggaaggcagaggggaagcaaaaacttgtctgttaaaatggtagcataaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcactccaaaggaaggcagaggggaagcaaaaacttgtctgttaaaatggtagcataaa 440

                                                                       
Query: 241 ttctttttctttccttttcctatcctagatgctatggtatgaatgtttatgtagtctatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctttttctttccttttcctatcctagatgctatggtatgaatgtttatgtagtctatg 500

                                                               
Query: 301 cacaaagttgttaaaagttaatcacaaatatgactaagaggtgggccctgag 352
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaaagatgttaaaagttaatcacaaatatgactaagaggtgggccctgag 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)