BAC Information

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BAC

Clone NameMSMg01-503O17
Chromosome14 (Build37)
Map Location 62,954,187 - 62,954,704
singlet/doubletsinglet
Overlap geneRnaseh2b
Upstream geneEbpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253, Dleu7
Downstream geneGucy1b2, LOC100042960, Ppia-ps14_723.1, LOC545062, EG629059, E130113E03Rik, Ints6, LOC100042969, LOC668263, Wdfy2, LOC668268, EG432867, EG654465, EG654458, 2410125J01Rik, Defb42, LOC100042978, Ctsb, Fdft1, Neil2, Gata4, LOC100042988, LOC432868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503O17.T7 (MSMg01no503_o17.b1)MSMg01-503O17.TJ (MSMg01no503_o17.g1)
ACCAG578922AG578923
length717723
length of high quality
(start - end)
292 (341 - 632)520 (85 - 604)
definitionCHROMAT_FILE: MSMg01no503_o17.b1 PHD_FILE: MSMg01no503_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:20 2005CHROMAT_FILE: MSMg01no503_o17.g1 PHD_FILE: MSMg01no503_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:31:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCNNCATCCCTATAATTGCGGCGCTAAANGAATCTCCATTTTCCCCACC
CGCNGAANCNNCACAGTTACAANNCACGAGAGGGGNCNANCCNGCNCANG
NCACNNGGAGNNCAACGNAGAACCCACCACAGAACCCGGGCNNCCANGAG
GNGGGCGCCNCNCAGGGNNNGCGAGNCACCNNCNCCCNGNAAAGCAGNNA
GACAGCGGCGGNGAAGGCAAACCAAGGGGGAANNANANNCNCNAGGGNCT
GTCAACAAANNANGACCAGGAAGGAAANCAAGGNANAANCNCNCNNNCAC
GANCCCCNNNGAAATGTTTTTTTTTGCAACAGNCACGGANTCTCCTCCCA
CAAAACTCTCATACTACTGCGCCTTTACATTTCTTTAATTGACATGTAAT
AGTTATACATATTTATGATATATGATATTACAGTGTGATGATTTGATACA
AGTGTGCAGTATGTAGTGATCATGTTGTGATGATGGATGGGTGGTTCCAC
TTTCTTGCTTTTTTTTTGTTTGTTTGCTATTTTTCGAGACAGGGTCTCTC
TGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCTC
GAACTCTTAAATCCGCCTGCCTCTGCCTCCCATATGCTGGTTTTAAAGGC
GTGCACCACCACTAATTCTGTTGAATGTCTTTGAGCCCCTCTTCTGGTAC
TTTATAAGACATATAAC
TTTATCTTTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTTTAGAATTATG
TTTTCATTAAAAAGATTTTAAAAAAAAAAGAATCAGTTATGGAAGGGAAA
GCTAGTTTTCCTGTTTCATGATGGAGGACCTTTGCGTTAGCATTATTTCT
GACTAATGGCTTTGTAAAACCGAAGAAACCGATCTTTGTTGGGGGTTGGA
GGCAAGAAAGAAAGAAAAGTGTGAAATACAGGGCAAAGGAGGGGCTCCTC
TAGGCTTTGTCAGGGACCCTAGGAAACAAATGACTTTTTCCTCTTCCCCA
AGGGTTGGCACATGAACTCAGGGTAGAAATAGAAGTGGGCCTTTCTCCCT
TTGTGTGCACACATGTTTGCGTTTAGAAACAAGCCTGTAGGTTGAAAGCT
GCCCTTGCCTTGGCAGGTAGTAGAGAACCTGGCCACTCCATGTGTGGCCT
TGAGAATACGTCTGCTCAGCTTCTTGGAAGATTGCTCATCATTTCCTGCA
GGCCATTTCTGGGTTGTCCAGCATGGCTCACATTTAACATTTTCCACATG
AGTGAACCTGGCTTTGTCTTTATACAGCGTTTCTTGGTGGGGCCCCGCTG
AACTTTCTCAGATGGCTGTAGGATCTGCTTCTGACTGTGGAGCACGTTTA
GGAGTGATGGATGGAATCCGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_o17.g1 MSMg01no503_o17.g1 CHROMAT_FILE:
MSMg01no503_o17.g1 PHD_FILE: MSMg01no503_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:21 2005
         (520 letters)



>mm_chr14_62953987_62954904
          Length = 918

 Score =  986 bits (510), Expect = 0.0
 Identities = 517/520 (99%), Gaps = 2/520 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccattttagaattatgttttcattaaaaagattttaaaaaaaaaagaatcagttatggaa 60
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 201 ccattttagaattatgttttcattaaaaagattt--aaaaaaaaagaatcagttatggaa 258

                                                                       
Query: 61  gggaaagctagttttcctgtttcatgatggaggacctttgcgttagcattatttctgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gggaaagctagttttcctgtttcatgatggaggacctttgcgttagcattatttctgact 318

                                                                       
Query: 121 aatggctttgtaaaaccgaagaaaccgatctttgttgggggttggaggcaagaaagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatggctttgtaaaaccgaagaaaccgatctttgttgggggttggaggcaagaaagaaag 378

                                                                       
Query: 181 aaaagtgtgaaatacagggcaaaggaggggctcctctaggctttgtcagggaccctagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaagtgtgaaatacagggcaaaggaggggctcctctaggctttgtcagggaccctagga 438

                                                                       
Query: 241 aacaaatgactttttcctcttccccaagggttggcacatgaactcagggtagaaatagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aacaaatgactttttcctcttccccaagggttggcacatgaactcagggtagaaatagaa 498

                                                                       
Query: 301 gtgggcctttctccctttgtgtgcacacatgtttgcgtttagaaacaagcctgtaggttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gtgggcctttctccctttgtgtgcacacatgtttgcgtttagaaacaagcctgtaggttg 558

                                                                       
Query: 361 aaagctgcccttgccttggcaggtagtagagaacctggccactccatgtgtggccttgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaagctgcccttgccttggcaggtagtagagaacctggccactccatgtgtggccttgag 618

                                                                       
Query: 421 aatacgtctgctcagcttcttggaagattgctcatcatttcctgcaggccatttctgggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aatacgtctgctcagcttcttggaagattgctcatcatttcctgcaggccatttctgggt 678

                                                   
Query: 481 tgtccagcatggctcacatttaacattttccacatgagtg 520
           |||||||||||||||||||||||||||||||||| |||||
Sbjct: 679 tgtccagcatggctcacatttaacattttccacacgagtg 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 918
Length adjustment: 10
Effective length of query: 510
Effective length of database: 908
Effective search space:   463080
Effective search space used:   463080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)