Query= MSMg01no504_a23.b1 MSMg01no504_a23.b1 CHROMAT_FILE:
MSMg01no504_a23.b1 PHD_FILE: MSMg01no504_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:32 2005
(538 letters)
>mm_chr14_27954700_27955639
Length = 940
Score = 915 bits (473), Expect = 0.0
Identities = 523/545 (95%), Gaps = 11/545 (2%)
Strand = Plus / Plus
Query: 4 ggaattctggagggtgtcttgcaaagctgatccaaacctaggagtctggagtcaggggag 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 197 ggaattctggagggtgtcttgcaaagctgatccaaacctaggagcctggagtcaggggag 256
Query: 64 agaagagagtttgtagaaggcaggtgggggggtgtggtcaggggaggtgtctggaaagaa 123
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 257 agaagagagtttgtagaaggcaggt-ggggggtgtggtcgggggaggtgtctggaaagaa 315
Query: 124 gcccgagtatacctccagcaacccagcaggaaggagctgaagcactcaagaggtacatgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gcccgagtatacctccagcaacccagcaggaaggagctgaagcactcaagaggtacatgg 375
Query: 184 aaggtt--------actggatgggatgctggttttcagcctctggagatctccatgcgtg 235
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 376 aaggttactcgctgactggatgggatgctggttttcagcctctggagatctccatgcctg 435
Query: 236 tacagtcttgccttctgggtgggtctgtaatgtttcctcacaaggtaatttttttttttt 295
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tacagtcttgccttcggggtgggtctgtaatgtttcctcacaaggtaatttttttttttt 495
Query: 296 --aatctgctttcttctcaccccgctgtgtgcacagcctagatgcttgggaaagcttcct 353
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 496 taaatctgccttcttctcaccctgctgtgtgcacagcctagatgcttgggaaagcttccc 555
Query: 354 gggctgccatgcaggcccttaactagccagccaccctagccttagtcggtccagcggagg 413
||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| ||||||
Sbjct: 556 gggctgccacgcaggcccttaactagccagccaccctagccttggtcagtccatcggagg 615
Query: 414 tcccatgccaggcaaataggagggaggtgggacttgctcaccagcgagcctgcagtgagc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcccatgccaggcaaataggagggaggtgggacttgctcaccagcgagcctgcagtgagc 675
Query: 474 tgtgtggtagcctgcctggaagtcactttgtcttctcatgtttgttctggaaggaggaag 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tgtgtggtagcctgcctggaagtcactttgtcttctcatgtttgttctggaaggaggaag 735
Query: 534 ggacc 538
|||||
Sbjct: 736 ggacc 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 940
Length adjustment: 10
Effective length of query: 528
Effective length of database: 930
Effective search space: 491040
Effective search space used: 491040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_a23.g1 MSMg01no504_a23.g1 CHROMAT_FILE:
MSMg01no504_a23.g1 PHD_FILE: MSMg01no504_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:31:32 2005
(575 letters)
>mm_chr14_28117790_28118764
Length = 975
Score = 849 bits (439), Expect = 0.0
Identities = 527/575 (91%), Gaps = 37/575 (6%)
Strand = Plus / Minus
Query: 1 tcaggtagtaattacaaa---tattattatgtatgtgtgtatataaatctgtatatatgt 57
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 611 tcaggtagtaattacaaatattattattatgtatgtgtgcatataaatctgtatatatgt 552
Query: 58 atatatacatctctgtatatatatgtatgtatgtatatatatatttacacacacacacat 117
|||||||||||| |||||| |||||||| ||| |||||||
Sbjct: 551 ttatatacatctc----tatata------tatgtata---ata--tacacac-------- 515
Query: 118 atatatatatatatataaattataattaaagaagaaaagattgtgaatctgagaggactg 177
|||||||||||||||||||||||||||| ||||||||||||| |||||| ||
Sbjct: 514 --------atatatataaattataattaaagaagaagagattgtgaatctaagaggagtg 463
Query: 178 gggtacttgggaggagttggaggcaggaacagaagaggtggaaatactgcaaataaaaac 237
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 462 gggtacttgggaggagttggaggcaggaacagaaggggtggaaatactgcaaataaaaac 403
Query: 238 taatgtatgaaattttcaaaatagatctttttaaatttaagaaagtcaaaagaagcttca 297
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 taatatatgacattttcaaaatagatctttttaaatttaagaaagtcaaaagaagcttca 343
Query: 298 ttccattttgtggcagaatggcattctggtgctggattatactgcgttttggttacttgc 357
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 342 ttccattttgtggcagaatggca-tctagtgctggattatactgcgttttggttacttgc 284
Query: 358 tcactagctggtaggtgttaagctgcatgtctgtggctattatggatggttctgc-gata 416
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||
Sbjct: 283 tcactagctggtaggtgttaagatgcatgtctgtggctattatggatggttctgcag-ta 225
Query: 417 agtgaacgttattaccttagttgggaatacgctgaggagtgaaatcagtatatctgctta 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agtgaacgttattaccttagttgggaatacgctgaggagtgaaatcagtatatctgctta 165
Query: 477 tttatggacacttacatttcctggctttttattggtgttgttgttataaaacgtataaca 536
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 164 tttatggacacttacatttcctggctttttattggtgttgttgttataaaatgtataaca 105
Query: 537 catccttccttctgcatgtgcaagactggttctct 571
|||||||||||||||||||||||||||||||||||
Sbjct: 104 catccttccttctgcatgtgcaagactggttctct 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
