BAC Information

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BAC

Clone NameMSMg01-504L06
Chromosome14 (Build37)
Map Location 49,947,846 - 50,101,559
singlet/doubletdoublet
Overlap geneSlc35f4
Upstream geneLOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-504L06.T7 (MSMg01no504_l06.b1)MSMg01-504L06.TJ (MSMg01no504_l06.g1)
ACCAG579518AG579519
length740744
length of high quality
(start - end)		667 (54 - 720)611 (69 - 679)
definitionCHROMAT_FILE: MSMg01no504_l06.b1 PHD_FILE: MSMg01no504_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:23 2005CHROMAT_FILE: MSMg01no504_l06.g1 PHD_FILE: MSMg01no504_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:32:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,947,846 - 49,948,509)(50,100,949 - 50,101,559)
sequence
GCCCCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAATGCTCTCTTTTGACCTCTGCAGGTACCAGCACACA
TATCTACACATACACATATACACATAATTAAAACTAAATCTTAAAAAGTA
ATTTGTGTTGAATTTCATAGACAAAATATATTTGACTGTAGTAGGATTAT
TGTCATCAATATTTGGATGGCATTTATAAAATTTTTCTGGTGTTTGCCTA
AAGGTTCCCTTGTTCTTAGGTAAACACGTAGTATTAAGATTATTGAAAAG
GGTTATCTCAGTAGGTGGTCCATGCACAGGTAATACTACAACTTTCCATT
TTGATCTGTTTGTTTGTTTGTTTGTTTATTTATTTATCTATCTATTTATT
TACTAATTATGTTTGTGGTACTCAAATCAGGATCTTGGGCACAGCAAGCC
AATGCTTTACTTACCAACCACATTCCCAATACTGTGTTCTGTAAGAAACC
AAAATGTTTCATCCCCAGCAATGGGATTTGTGCTTGTCACATGCTCTTCA
TTTCTTATAGCTGGTGATTTTTATTCACTTTACTATTATGTTTTCAACAT
ACTATTTTTATTGATTATAAATATATTTTATTGATTTTTATTGATTATAT
AAATCAATATCTTGTTAAAAAATCTGCTATTTATATCTTTGTAATTTTTG
TAGGTCCTATATATGCTATAGTTAAGAAATTAACAGATGC

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGCTGCTGGGGAAAGACAATCTTTATGTCTTT
TCAAATTTTAAATATACCATTGACTATATTTTGTATTTACTCTCCTCTTC
TGAAGTTCCTTATAGTTTCAGATTACCAGATGCTATTTAGAAGATCCTCT
TTCAATGGGATTTGCAATTCACGATGTATAATTTCTAATATGATTATATA
GATTCAGTCCTAGGCAAATAATCTTGTGTGGAGCTTTGAACAGTCTCCTT
TTTCTTCCCAGATTAAAGAAATTGAAATCTCTAACACCTGTTCTAGGGTT
TTTTTTAAAAAAAGTCTTACTAAAAACTCAAGAGTACAAGCAAAGTTCAC
GAGGCCTAATTATACAGAGGGCTCTCAGCTGGAACGCACAGGAGCGCAGC
ATGCTGGGGGACAGGCTACAGTATTGTGTACTGAGCTCTTGATTTCTTTT
TGCAAAAAAAAGTTGTGTGAGAAGCAGCTTGGGAGGAGAGCTAATTAGAG
GGGTTTGGGATTCATAGAAGAGCTCCTGCCTGACCAAAATGTAAAGCAGG
TTATCAGCTGAAAGCCAAGAAATGAGTCTTTAGCTGAGGAAGTCACTCAT
GCCTTCAGAAAGTCAGATACCCAGGGCCCATTATACAAGTTGGCTTTTGG
ATTTTTGGTTTGTGGGGGGGTTTTTGTTTGTTGTATCTCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no504_l06.b1 MSMg01no504_l06.b1 CHROMAT_FILE:
MSMg01no504_l06.b1 PHD_FILE: MSMg01no504_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:23 2005
         (667 letters)



>mm_chr14_49947643_49948709
          Length = 1067

 Score = 1284 bits (664), Expect = 0.0
 Identities = 664/664 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatgctctcttttgacctctgcaggtaccagcacacatatctacacatacaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatgctctcttttgacctctgcaggtaccagcacacatatctacacatacaca 263

                                                                       
Query: 64  tatacacataattaaaactaaatcttaaaaagtaatttgtgttgaatttcatagacaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tatacacataattaaaactaaatcttaaaaagtaatttgtgttgaatttcatagacaaaa 323

                                                                       
Query: 124 tatatttgactgtagtaggattattgtcatcaatatttggatggcatttataaaattttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatatttgactgtagtaggattattgtcatcaatatttggatggcatttataaaattttt 383

                                                                       
Query: 184 ctggtgtttgcctaaaggttcccttgttcttaggtaaacacgtagtattaagattattga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctggtgtttgcctaaaggttcccttgttcttaggtaaacacgtagtattaagattattga 443

                                                                       
Query: 244 aaagggttatctcagtaggtggtccatgcacaggtaatactacaactttccattttgatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaagggttatctcagtaggtggtccatgcacaggtaatactacaactttccattttgatc 503

                                                                       
Query: 304 tgtttgtttgtttgtttgtttatttatttatctatctatttatttactaattatgtttgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtttgtttgtttgtttgtttatttatttatctatctatttatttactaattatgtttgt 563

                                                                       
Query: 364 ggtactcaaatcaggatcttgggcacagcaagccaatgctttacttaccaaccacattcc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtactcaaatcaggatcttgggcacagcaagccaatgctttacttaccaaccacattcc 623

                                                                       
Query: 424 caatactgtgttctgtaagaaaccaaaatgtttcatccccagcaatgggatttgtgcttg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caatactgtgttctgtaagaaaccaaaatgtttcatccccagcaatgggatttgtgcttg 683

                                                                       
Query: 484 tcacatgctcttcatttcttatagctggtgatttttattcactttactattatgttttca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcacatgctcttcatttcttatagctggtgatttttattcactttactattatgttttca 743

                                                                       
Query: 544 acatactatttttattgattataaatatattttattgatttttattgattatataaatca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acatactatttttattgattataaatatattttattgatttttattgattatataaatca 803

                                                                       
Query: 604 atatcttgttaaaaaatctgctatttatatctttgtaatttttgtaggtcctatatatgc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atatcttgttaaaaaatctgctatttatatctttgtaatttttgtaggtcctatatatgc 863

               
Query: 664 tata 667
           ||||
Sbjct: 864 tata 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space:   694449
Effective search space used:   694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no504_l06.g1 MSMg01no504_l06.g1 CHROMAT_FILE:
MSMg01no504_l06.g1 PHD_FILE: MSMg01no504_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:23 2005
         (611 letters)



>mm_chr14_50100749_50101759
          Length = 1011

 Score = 1174 bits (607), Expect = 0.0
 Identities = 610/611 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgctggggaaagacaatctttatgtcttttcaaattttaaatataccattgactata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tgctgctggggaaagacaatctttatgtcttttcaaattttaaatataccattgactata 752

                                                                       
Query: 61  ttttgtatttactctcctcttctgaagttccttatagtttcagattaccagatgctattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ttttgtatttactctcctcttctgaagttccttatagtttcagattaccagatgctattt 692

                                                                       
Query: 121 agaagatcctctttcaatgggatttgcaattcacgatgtataatttctaatatgattata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agaagatcctctttcaatgggatttgcaattcacgatgtataatttctaatatgattata 632

                                                                       
Query: 181 tagattcagtcctaggcaaataatcttgtgtggagctttgaacagtctcctttttcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tagattcagtcctaggcaaataatcttgtgtggagctttgaacagtctcctttttcttcc 572

                                                                       
Query: 241 cagattaaagaaattgaaatctctaacacctgttctagggttttttttaaaaaaagtctt 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cagatcaaagaaattgaaatctctaacacctgttctagggttttttttaaaaaaagtctt 512

                                                                       
Query: 301 actaaaaactcaagagtacaagcaaagttcacgaggcctaattatacagagggctctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 actaaaaactcaagagtacaagcaaagttcacgaggcctaattatacagagggctctcag 452

                                                                       
Query: 361 ctggaacgcacaggagcgcagcatgctgggggacaggctacagtattgtgtactgagctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctggaacgcacaggagcgcagcatgctgggggacaggctacagtattgtgtactgagctc 392

                                                                       
Query: 421 ttgatttctttttgcaaaaaaaagttgtgtgagaagcagcttgggaggagagctaattag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ttgatttctttttgcaaaaaaaagttgtgtgagaagcagcttgggaggagagctaattag 332

                                                                       
Query: 481 aggggtttgggattcatagaagagctcctgcctgaccaaaatgtaaagcaggttatcagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aggggtttgggattcatagaagagctcctgcctgaccaaaatgtaaagcaggttatcagc 272

                                                                       
Query: 541 tgaaagccaagaaatgagtctttagctgaggaagtcactcatgccttcagaaagtcagat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tgaaagccaagaaatgagtctttagctgaggaagtcactcatgccttcagaaagtcagat 212

                      
Query: 601 acccagggccc 611
           |||||||||||
Sbjct: 211 acccagggccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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