BAC Information

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BAC

Clone NameMSMg01-506E20
Chromosome14 (Build37)
Map Location 86,610,141 - 86,610,803
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668603, LOC100043301
Downstream geneEG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311, Diap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506E20.T7 (MSMg01no506_e20.b1)MSMg01-506E20.TJ (MSMg01no506_e20.g1)
ACCAG580730AG580731
length765766
length of high quality
(start - end)
699 (45 - 743)247 (74 - 320)
definitionCHROMAT_FILE: MSMg01no506_e20.b1 PHD_FILE: MSMg01no506_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:27 2005CHROMAT_FILE: MSMg01no506_e20.g1 PHD_FILE: MSMg01no506_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAACCCATTCTGGAAGAGACTGGAATTTAATTTTTTTTGTATGT
GAGAAACAATAGAACAAAGGAAAAGCAAAGAGAATTACCATGGCCAATGG
TTTTGCTCCAGTAGCCAGCAATTGTGTTAGGTTAAAGGAAGGCTTCCATA
GATAAAGAAGAGATTACTAGTGTTGGTACGTTGTGCAGTTTAACCTAAGA
ATTATAATAAAAGAAGTATCATTATTCATCTAATATTATGCTTTAATAGT
AGTTATAAAACTCAACAATGGACCTCTTTATTAATGTAGAGATAAAATTT
TAGAAACTTCTCGAAAGTGGAGAGACACCAAGGAGAAAATGGGACTAAGA
AAGGTAAGTTTATACAGATAAGAATATGTATACCTTGGGGAGCAGGAGCA
AGACAAGCCCATGGCAGAAACCACATCACATTAACATTAACCCAAGAGTA
AATATAGTCTGAAGCAAAATAAAATAAAATAAAATAAAATAAAATAAAAT
AAAATAAAATAAAATAAAATAAATAAAACCCTCCCCAAACGCAGTGCTAG
ATCTTGATTAATCTTCCACCCAATCCTGCCTTGGTAATAGGAATATACTT
CATAGCAACAGCATTGTTTTAGGAATGAATGATCATGTTTTCAGGGGATA
GTAGACATGTAATGATCTTCACTTTGAGAAAAGCCTGAAGAGAATGCAAG
AGACTTTATCCCTAN
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAG
AAACACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGGTTCCATCTCACACCAGTCAGAATGGGTAAGATAA
AAAGTTTAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGTGGTTCCTCAGAAAATTTTACATAGTACTACAGGAGGATCCAG
CAATACTTCTCCTGGGCATATATCCAGAAGATGTCCCAACCAGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCTTCCAAACGCTGACACCATTA
CATACACTAGCAAGATTGTGCTGAAAGGACCCAGATATAGCTGTCTCTTG
TGAGACAATGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAG
CTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAAAAAGTACCC
AAGGAGCTAAAGGGATCTGGAACCCTATAGGTGGAACAACATTATGAACT
AACCAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATG
GCCTAGTCGGCCATCAGTGGAAAGAGAGGCCCATTGGACATGCACACTTT
ATATGCCCCAGTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_e20.b1 MSMg01no506_e20.b1 CHROMAT_FILE:
MSMg01no506_e20.b1 PHD_FILE: MSMg01no506_e20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:27 2005
         (699 letters)



>mm_chr14_86610137_86611231
          Length = 1095

 Score = 1100 bits (569), Expect = 0.0
 Identities = 649/699 (92%), Gaps = 40/699 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccaacccattctggaagagactggaatttaattttttttgtatgtgagaaaca 64
           ||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||
Sbjct: 667 gaattcaccaacccattctggaagaaactggaatttga-tttttttgtatgtgagaaaca 609

                                                                       
Query: 65  atagaacaaaggaaaagcaaagagaattaccatggccaatggttttgctccagtagccag 124
           || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 608 atggaacaaaggaaaagcaaagataattaccatggccaatggttttgctccagtagccag 549

                                                                       
Query: 125 caattgtgttaggttaaaggaaggcttccatagataaagaagagattactagtgttggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 caattgtgttaggttaaaggaaggcttccatagataaagaagagattactagtgttggta 489

                                                                       
Query: 185 cgttgtgcagtttaacctaagaattataataaaagaagtatcattattcatctaatatta 244
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 488 cgttgtgcagtttaacctaagaattataataaaagaagtatc--tattcatctaatatta 431

                                                                       
Query: 245 tgctttaatagtagttataaaactcaacaatggacctctttattaatgtagagataaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgctttaatagtagttataaaactcaacaatggacctctttattaatgtagagataaaat 371

                                                                       
Query: 305 tttagaaacttctcgaaagtggagagacaccaaggagaaaatgggactaagaaaggtaag 364
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct: 370 tttagaaacttctcgaaagtggagagacacc-aggagaaaatgggactgagaaagataag 312

                                                                       
Query: 365 tttatacagataagaatatgtataccttggggagcaggagcaagacaagcccatggcaga 424
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 311 tttatacagataagaatatgtataccttggggagcaagagcaagacaagcccatggcaga 252

                                                                       
Query: 425 aaccacatcacattaacattaacccaagagtaaatatagtctgaagcaaaataaaataaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaccacatcacattaacattaacccaagagtaaatatagtctgaagcaaaataaaataaa 192

                                                                       
Query: 485 ataaaataaaataaaataaaataaaataaaataaaataaaataaataaaa----ccctcc 540
           |||||||||||||||||                                |    ||| ||
Sbjct: 191 ataaaataaaataaaat--------------------------------acccccccccc 164

                                                                       
Query: 541 ccaaacgcagtgctagatcttgattaatcttccacccaatcctgccttggtaataggaat 600
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 163 ccaaatgcagtgctagatcttgattcatcttccacccaatcctgccttggtaataggaat 104

                                                                       
Query: 601 atacttcatagcaacagcattgttttaggaatgaatgatcatgttttcaggggatagtag 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 atacttcatagcaacagcattgttttaggaatgaatgatcatgttttcaggggatagtag 44

                                                  
Query: 661 acatgtaatgatcttcactttgagaaaagcctgaagaga 699
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 43  acatgtaatgatcttcactttgagaaaagcctgaagaga 5


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 11
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1095
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1085
Effective search space:   747565
Effective search space used:   747565
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)