Query= MSMg01no506_k22.b1 MSMg01no506_k22.b1 CHROMAT_FILE:
MSMg01no506_k22.b1 PHD_FILE: MSMg01no506_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:58 2005
(723 letters)
>mm_chr14_81653073_81654195
Length = 1123
Score = 1009 bits (522), Expect = 0.0
Identities = 716/900 (79%), Gaps = 180/900 (20%)
Strand = Plus / Plus
Query: 4 gaattctcatcagcttcttattcttaatgagatttttttctcagtttggacatgtgttga 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 gaattctcatcagcaacttattcttaatgagatttttttctcagtttggacatgtgttga 83
Query: 64 ttagggataaaatataattcccaggtcataggaacataagaaggattaatgagataatat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ttagggataaaatataattcccaggtcataggaacataagaaggattaatgagataatat 143
Query: 124 ttgtgatggcacaatgcagtatctgctatataacggatgtcaaaatgttaactgatttgt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttgtgatggcacaatgcagtatctgctatataacggatgtcaaaatgttaactgatttgt 203
Query: 184 ttcaagagacttctggtttccatgccagattatgaacagtttaaagtgtgcttctagcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttcaagagacttctggtttccatgccagattatgaacagtttaaagtgtgcttctagcat 263
Query: 244 ctaccaggctatattttgtcaataaccagaccagataatagtataaataaggatttgaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaccaggctatattttgtcaataaccagaccagataatagtataaataaggatttgaaa 323
Query: 304 gcagcttttgtatgaataaacttaagtagaagaatatggaatgcagggtatgattgaaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcagcttttgtatgaataaacttaagtagaagaatatggaatgcagggtatgattgaaca 383
Query: 364 tcctctggcacattcagagattgataatctcatggataacctctaaatgtatgaaactgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcctctggcacattcagagattgataatctcatggataacctctaaatgtatgaaactgt 443
Query: 424 actttcatacatttagataatattttctttcttttaccctctgacccaccaggt------ 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actttcatacatttagataatattttctttcttttaccctctgacccaccaggtcagtgc 503
Query: 477 ------------------------------------------------------------ 477
Sbjct: 504 tcaagacaactgtaaaaccattattagtcatgtaaaagacactttgcatggaaatggtgt 563
Query: 477 ------------------------------------------------------------ 477
Sbjct: 564 tgtgagtgtcctttcaggtccacattacttgatactgatcaagtgtctttgttcatcacc 623
Query: 478 ------------------------------------------------------tagagc 483
||||||
Sbjct: 624 caatagcattttgtcaacacaaagtaaatattaacattgacataaaatattctttagagc 683
Query: 484 aatgttggatctattcaaaaagcaatggtccccaagaccaaggacgattacaaagggtgc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatgttggatctattcaaaaagcaatggtccccaagaccaaggacgattacaaagggtgc 743
Query: 544 tctcaaaaatgctcggcaatcccctagagaacattatgttaaatataattttaagaattt 603
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tctcaaaaatgctcagcaatcccctagagaacattatgttaaatataattttaagaattt 803
Query: 604 ccagtgagttatttttatctgtctcatagcacatttcatttttcccattaaatgtttttc 663
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 804 ccagtgagttatttttatctgtctcatagcgcatttcatttttcccattaaatgtttttc 863
Query: 664 tccaatgtacaaaacattgtattttaaatttgtatttgaatgaataactaacatcatttt 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 tccaatgtacaaaacattgtattttaaatttgtatttgaatgaataactaacatcatttt 923
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 723
Length of database: 1123
Length adjustment: 10
Effective length of query: 713
Effective length of database: 1113
Effective search space: 793569
Effective search space used: 793569
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no506_k22.g1 MSMg01no506_k22.g1 CHROMAT_FILE:
MSMg01no506_k22.g1 PHD_FILE: MSMg01no506_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:58 2005
(635 letters)
>mm_chr14_81783862_81784896
Length = 1035
Score = 1212 bits (627), Expect = 0.0
Identities = 633/635 (99%)
Strand = Plus / Minus
Query: 1 tcttaatatcacctatgggtctgatttctctatactaacatttcacttcaactggaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 tcttaatatcacctatgggtctgatttctctatactaacatttcacttcaactggaaatt 776
Query: 61 cctgttgaagacctgtgctatagaaagttttgatttttcagttgctacctgatagtgttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 cctgttgaagacctgtgctatagaaagttttgatttttcagttgctacctgatagtgttt 716
Query: 121 ccagttgaagagaagttgtgatttaactcgtgacctcacttttcttaaaccttggagaat 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 715 ccagttgaagagaagttgtgatttaactcatgacctcacttttcttaaaccttggagaat 656
Query: 181 tcttgaattttcacacatgtgcctctttgactttttaagatgaaaggagtttgttttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tcttgaattttcacacatgtgcctctttgactttttaagatgaaaggagtttgttttgtt 596
Query: 241 ttgtttttttagctttttgtacatcagaatgaaaccagaagctgaaggtggtttatgtgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ttgtttttttagctttttgtacatcagaatgaaaccagaagctgaaggtggtttatgtgt 536
Query: 301 gtcaaaatccaacattgatgtggagattgactatctgaatttttagagacaaatattatc 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gtcaaaatccaacattgacgtggagattgactatctgaatttttagagacaaatattatc 476
Query: 361 agaggctgtgccaaacccataagtaaaagaaacacttaattcatccttaccactaaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 agaggctgtgccaaacccataagtaaaagaaacacttaattcatccttaccactaaacaa 416
Query: 421 agaggaagctggattcattttataaatgaagatattaatttctttaagaaatatttacaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 agaggaagctggattcattttataaatgaagatattaatttctttaagaaatatttacaa 356
Query: 481 acagctattaattttattctctgaaaaaaaatccatgattattaggttttcaaagccaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acagctattaattttattctctgaaaaaaaatccatgattattaggttttcaaagccaga 296
Query: 541 tagagagatatgtgtaaggtacaccttctgatacaatagaaatattattgccattaatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tagagagatatgtgtaaggtacaccttctgatacaatagaaatattattgccattaatat 236
Query: 601 ctggaacaccttggaactgtttctctctctctctg 635
|||||||||||||||||||||||||||||||||||
Sbjct: 235 ctggaacaccttggaactgtttctctctctctctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
