BAC Information

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BAC

Clone NameMSMg01-507A10
Chromosome14 (Build37)
Map Location 76,509,474 - 76,670,050
singlet/doubletdoublet
Overlap gene1200011I18Rik, Nufip1, LOC100043752, 2900040C04Rik
Upstream gene4921509B22Rik, LOC100043176, Lcp1, Cpb2, Zc3h13, Gm912, Spert, 4930564B18Rik, Cog3, Slc25a30, LOC100043189, Tpt1, LOC100038852, Gtf2f2, LOC668504, Kctd4
Downstream geneTsc22d1, 2810032E02Rik, LOC100043753, LOC100043201, 9030625A04Rik, Ccdc122, D230005D02Rik, LOC100043755
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507A10.T7 (MSMg01no507_a10.b1)MSMg01-507A10.TJ (MSMg01no507_a10.g1)
ACCAG581278AG581279
length764774
length of high quality
(start - end)		670 (48 - 717)611 (78 - 688)
definitionCHROMAT_FILE: MSMg01no507_a10.b1 PHD_FILE: MSMg01no507_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:25 2005CHROMAT_FILE: MSMg01no507_a10.g1 PHD_FILE: MSMg01no507_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,669,387 - 76,670,050)(76,509,474 - 76,510,084)
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGATCC
GCGGAATTCTCTGAGACTGTGCTACAGACAGTTTTGTGAGCCTGTGTGTG
GATTTTGGGAATCAAACCTGTGTCCTCTGGAAGAGCGGCCAGTGCTCTTT
ACCACGGAGCTCTTTCCAGCCTCATCCCTTAATTATCTAGACGGTGAATA
ATTGCGTATAAGTGAAGTCTCGGAGTTCACTTTTGGGTTTTAGAACACTT
GACAAAAATTTTATATTTCCCATCACGGATGCTGGAATTTGAGATGTATT
CAGCCAGCAGACAAGCTTGGCTAAGCATGTTCCTAAGGACTGGTGAATGA
AACAGGGTTACAGAGCATACAGCAGAACTCCACTGGCCACTTGGATGGGC
GCTGTGGAGACGAATTGTCCAACAGTTCGTCCTGTACAGTCAGCGTTCCT
CTAATCCCTGCAAAGAGCCCAGCAGTGTGCTAAGCAAATCGCAACTATTC
ATTTGCTCAATCCTCATCTCCACCCTATAAAGTGGGTGCTGCTATCATGC
TTACAATGGCGATCATACTCTACCACACTTACTGAGCCGTGAAGCGGGTA
TGTTGCTTGACCCCTTTCCACACAACTAAGAAGTCTTAGAACTAAAAGTC
AATCTCAGATCTATAGACTAAAATCGATCAACAGTTCTTCCAGGTCACCA
AGTGATTGCAAGCTAAGTTTCTTCTGGAAAACCACAGAGGTGGCATGGGG
ACAAGGGTACAGGG

NCCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCATACTTCTTCAACCTAACT
GAGTAGAAATTTCCTTCCTAAAACAAAGAATAAAGGGAATTTTTAAACAT
AGCGGCACTAGAAATAAGATCTGGAAGGAAGAATCTGCCGGAGACATAGT
CTCTGGGTAGCCAGAAAAACAAAATCAGATCAACATTCTGTCAATTTTGT
TCTTTCCCAAGTAGAGTCAGTGCCGGCCTTCAAACTGGAACAAACACTAA
AGCCAGAAAAGCATGAAAGAGTGTGCGAGGTATTGATGTGGCATAGATGC
ACGTTAAGGTTGCAAGACACAGTGAATTGGTGGAGACTGAGATATCCACA
AATTAGTTGAACAGAATGTGTTAAATATTAGCGTAACTGGGGAGAGGAAA
ACCCGGAGGAAGACGTGACAATGCTCAGGAAGGTGACGCTTAAACTGGTA
TTTGAAGGACGTTTTGTCAGGCATTTAAGTACAACCAGAGCACCCCCAAA
ATTCTATCATCAAAGCATAAACTCGAACTGTGTGGGCACTGGGCTTCTGT
GTAAGATGGAATGATAGAATGAGGTCGGGAAGTCAGGCCGGGGACGAGAG
AGGCACAGGATTTTTGGCAAGAGTCTTGTAAATCTGAAGATATAGAGATA
CTAGGNTCTAACTTGGGCTTCCTCACCGACTAGCTGCGTGTCTTANGCAC
CGATTCATCAGCCGCTGTCATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_a10.b1 MSMg01no507_a10.b1 CHROMAT_FILE:
MSMg01no507_a10.b1 PHD_FILE: MSMg01no507_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:25 2005
         (670 letters)



>mm_chr14_76669312_76670381
          Length = 1070

 Score = 1230 bits (636), Expect = 0.0
 Identities = 657/664 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctctgagactgtgctacagacagttttgtgagcctgtgtgtggattttgggaatc 66
           |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||
Sbjct: 739 gaattctctgagactgggttacagacagttttgtgagcctgtgtgtggatttggggaatc 680

                                                                       
Query: 67  aaacctgtgtcctctggaagagcggccagtgctctttaccacggagctctttccagcctc 126
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 679 aaacctgtgtcctctggaagagcggccagtgctctttaccacggagctctttccagcccc 620

                                                                       
Query: 127 atcccttaattatctagacggtgaataattgcgtataagtgaagtctcggagttcacttt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atcccttaattatctagacggtgaataattgcgtataagtgaagtctcggagttcacttt 560

                                                                       
Query: 187 tgggttttagaacacttgacaaaaattttatatttcccatcacggatgctggaatttgag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgggttttagaacacttgacaaaaattttatatttcccatcacggatgctggaatttgag 500

                                                                       
Query: 247 atgtattcagccagcagacaagcttggctaagcatgttcctaaggactggtgaatgaaac 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atgtattcagccagcagacaagcttggctaagcatgttcctaaggactggtgaatgaaac 440

                                                                       
Query: 307 agggttacagagcatacagcagaactccactggccacttggatgggcgctgtggagacga 366
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 439 agggttacagagcatacagcagaattccactggccacttggatgggcgctgtggagacga 380

                                                                       
Query: 367 attgtccaacagttcgtcctgtacagtcagcgttcctctaatccctgcaaagagcccagc 426
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 attgtccaacagtgcgtcctgtacagtcagcgttcctctaatccctgcaaagagcccagc 320

                                                                       
Query: 427 agtgtgctaagcaaatcgcaactattcatttgctcaatcctcatctccaccctataaagt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agtgtgctaagcaaatcgcaactattcatttgctcaatcctcatctccaccctataaagt 260

                                                                       
Query: 487 gggtgctgctatcatgcttacaatggcgatcatactctaccacacttactgagccgtgaa 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gggtgctgctatcatgcttacaatggcgatcatactctaccacacttactgagccgtgaa 200

                                                                       
Query: 547 gcgggtatgttgcttgacccctttccacacaactaagaagtcttagaactaaaagtcaat 606
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gcaggtatgttgcttgacccctttccacacaactaagaagtcttagaactaaaagtcaat 140

                                                                       
Query: 607 ctcagatctatagactaaaatcgatcaacagttcttccaggtcaccaagtgattgcaagc 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 ctcagatctatagactaaaatcgatcaacagttcttccaggtcaccaagtgattgcaagc 80

               
Query: 667 taag 670
           ||||
Sbjct: 79  taag 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no507_a10.g1 MSMg01no507_a10.g1 CHROMAT_FILE:
MSMg01no507_a10.g1 PHD_FILE: MSMg01no507_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:25 2005
         (611 letters)



>mm_chr14_76509274_76510284
          Length = 1011

 Score = 1058 bits (547), Expect = 0.0
 Identities = 595/611 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcatacttcttcaacctaactgagtagaaatttccttcctaaaacaaagaataaaggg 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 actcatacttcttcaacctaactgggtagaaatttccttcctaaaacaaagaataaaggg 260

                                                                       
Query: 61  aatttttaaacatagcggcactagaaataagatctggaaggaagaatctgccggagacat 120
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttttaaaaataacggcactagaaataagatctggaaggaagaatctgccggagacat 320

                                                                       
Query: 121 agtctctgggtagccagaaaaacaaaatcagatcaacattctgtcaattttgttctttcc 180
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 321 agtctctgggtagccagaaaaacaaagtcagatcaacattctgtcagttttgttctttcc 380

                                                                       
Query: 181 caagtagagtcagtgccggccttcaaactggaacaaacactaaagccagaaaagcatgaa 240
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 caagtagagtcagcgccggccttcaaactggaacaaacactaaagccggaaaagcatgaa 440

                                                                       
Query: 241 agagtgtgcgaggtattgatgtggcatagatgcacgttaaggttgcaagacacagtgaat 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 agagtgtgcgaggtattgatgtggcatagatgcatgttaaggttgcaagacacagtgaat 500

                                                                       
Query: 301 tggtggagactgagatatccacaaattagttgaacagaatgtgttaaatattagcgtaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtggagactgagatatccacaaattagttgaacagaatgtgttaaatattagcgtaac 560

                                                                       
Query: 361 tggggagaggaaaacccggaggaagacgtgacaatgctcaggaaggtgacgcttaaactg 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tggggagaggaaaacccggaggaagacgtgacaatgctcgggaaggtgacgcttaaactg 620

                                                                       
Query: 421 gtatttgaaggacgttttgtcaggcatttaagtacaaccagagcacccccaaaattctat 480
           |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 621 gtatatgaaggacgttttgtcaggcatttaagtacaaccatagcacccccaaaagtctat 680

                                                                       
Query: 481 catcaaagcataaactcgaactgtgtgggcactgggcttctgtgtaagatggaatgatag 540
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 681 cgtcaaagcataaactcgaactgtgtgggcactgggctgctgtgtaagatggaatgatag 740

                                                                       
Query: 541 aatgaggtcgggaagtcaggccggggacgagagaggcacaggatttttggcaagagtctt 600
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 741 aatgaggtcgggaagtcaggccggggaggagagaggcacaggatctttggcaagagtctt 800

                      
Query: 601 gtaaatctgaa 611
           |||||||||||
Sbjct: 801 gtaaatctgaa 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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