BAC Information

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BAC

Clone NameMSMg01-507D07
Chromosome14 (Build37)
Map Location 16,956,407 - 16,956,617
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc3b, LOC667205, 1700062C10Rik
Downstream geneLOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb, Tpi-rs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507D07.T7 (MSMg01no507_d07.b1)MSMg01-507D07.TJ (MSMg01no507_d07.g1)
ACCAG581413AG581414
length723767
length of high quality
(start - end)		215 (36 - 250)618 (73 - 690)
definitionCHROMAT_FILE: MSMg01no507_d07.b1 PHD_FILE: MSMg01no507_d07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:40 2005CHROMAT_FILE: MSMg01no507_d07.g1 PHD_FILE: MSMg01no507_d07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTGTTCAGGATCCGCGGAATTCTCAA
AAGATGTTCAAAAAAAATAAAGCAGGAATCATGTTACAGGCCTGATCATC
CAGGTTTGCCCCTCTTCTTCTTCCTCTATCTACCCCAGTATCCAAAATTC
TGTGTTCCTCCTAGCATCAGAACTTGAGATCACCTGATAGTTAAAAACTC
AACAGAAGTGGATAAAAGAAAGACTTTGCCTTGGAAATATTAATTGGGAA
AGAAAGGNNAGAAAAATGTATACTTTAAAGGGAAGAGCTTTGAGAGAGGA
GGAAGATTACCAAAGAAGGCCAGGCAATATTTGGGTTGGCTTTGAAAAGA
ATGGCCACATGAAAAAGCCGTCTTTCCTAGGAAAAAAGCTTCCCATTTTT
TTAAAACCCCCCACAAAAAATTGGGCAAAAAAAGGGGAACCTTGGGTTTT
AAGAAATTCCTTCTTAAAATAAAAACCCCCCCAAGGGGGGTGGGGGGGAA
AAAAAAGGGGAACTCCCCCAGTTTCTAAAAAGGGCCTCAGGAAGGCCCCC
TCTTGGGGGAGAAAATTTAAAAAAAGGGGGGAAAACACTTGTTGGGCCCC
CCGGGGTTATTTGTGGCCCAAAATTTTCTCCCCGGGAATTTTTTTTTTTG
GGGGGGGACCCCCCCCTAAAAAAATTTTTGTGGGAAAAAAAAAAACCCCC
CCTTTATTCCCCCTCTTTTTTGG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGATGAATGAAGGCAAGTCCTCTACC
CTAAGTGACACTTTTAGTCCCAAACTATAGACTGATTTCTTAATTTTTTT
AAATTTAGGGTTTCATTGTGTAGCTTTGGCTGGTCAGTAACTTATTATAC
AGCCTGGGTAGGCAACAAATTCACAGAGATCTGCCTGCCTCTGCCTCCTG
ATTCAAAGAATGTGCCACAATGCCTAGTACTACAGAATATTTTCTTAAAG
ATGCATTTTTATTTTTTATTTATTTATTTATTTATTATTTGGTTTTTTGA
GACAGGGTTTCTCTGTGTAGCACTGGCTGTCCTGGAACTCACTCTGTAGA
CCAGGCTGGCCTTGAACTCAGAAATCCTCCTGCCTCTGCCTCCCGAGTGC
TGGGATTAAAGGTGTGCGCCACCACGGCTGGCTAAGATGCATTTTTAAAA
ATAATTTTATTTATGCATCTGTGTGTATGCATGTGAGTGTGGATACTCAC
AAAGACCCTTAGAGGTCACTGGATCTCCTGGAGTTACAGGCCTTGGTGAG
CTACTGTATGTGGGTGATGAGAAGCAAAATTAGGCCCTCTGAATAAGCAG
CAACTGCCTTTAACAGCTGGGCTGTCTTTCCAGCACCGGCCACTGCCCCA
ATCCCTGTTGCTGCTCCCCCCACACAGATATACAGTATTAATAAGGCTTC
TTAACAAATACATCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_d07.b1 MSMg01no507_d07.b1 CHROMAT_FILE:
MSMg01no507_d07.b1 PHD_FILE: MSMg01no507_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:40 2005
         (215 letters)



>mm_chr14_16956203_16956817
          Length = 615

 Score =  385 bits (199), Expect = e-111
 Identities = 208/211 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattctcaaaagatgttcaaaaaaaataaagcaggaatcatgttacaggcctgatcat 64
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctcaaaagatgaaaaaaaaaaataaagcaggaatcatgttacaggcctgatcat 264

                                                                       
Query: 65  ccaggtttgcccctcttcttcttcctctatctaccccagtatccaaaattctgtgttcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaggtttgcccctcttcttcttcctctatctaccccagtatccaaaattctgtgttcct 324

                                                                       
Query: 125 cctagcatcagaacttgagatcacctgatagttaaaaactcaacagaagtggataaaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctagcatcagaacttgagatcacctgatagttaaaaactcaacagaagtggataaaaga 384

                                          
Query: 185 aagactttgccttggaaatattaattgggaa 215
           |||||||||||||||||||||||||||||||
Sbjct: 385 aagactttgccttggaaatattaattgggaa 415


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 615
Length adjustment: 9
Effective length of query: 206
Effective length of database: 606
Effective search space:   124836
Effective search space used:   124836
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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