BAC Information

Click to search

BAC

Clone NameMSMg01-508F09
Chromosome14 (Build37)
Map Location 97,551,098 - 97,551,664
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl1, LOC100043366, LOC668654
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-508F09.T7 (MSMg01no508_f09.b1)MSMg01-508F09.TJ (MSMg01no508_f09.g1)
ACCAG582273AG582274
length750761
length of high quality
(start - end)
539 (49 - 587)567 (79 - 645)
definitionCHROMAT_FILE: MSMg01no508_f09.b1 PHD_FILE: MSMg01no508_f09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:13 2005CHROMAT_FILE: MSMg01no508_f09.g1 PHD_FILE: MSMg01no508_f09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:37:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCATAACATGTCTTTTGAATGGCCGAGAAGCACCTAAAGAAATG
TTCCAAGTCTTTTGTGTCAGAGAAATAAAAATCAAAACGACCCTGAGATT
TCCCCCTTACACCAATCAGAATGCCTAAGATCAAAACCTCAGTTGACTAC
ACATGTTGGGGAGTATATGGAGAAAGAGGAACACTCCTCCATGGCTGGTG
GGATTGCAAACTGGTACAACTACTTTGGACATCAATCTGGAGGCTCCTCA
GAAAAATTGGAAATAGATCTACCTAAAGACCAGCAATACTACTCTTAGGA
TTATACCCAAAAGATGAACCACCATGCCACAGGGGCATATGTTCCATTAT
GTTCACAATGGCCTTGTTTGTGATAACTATAAAATAGAAACAAGCCAGCT
GTTCCATGACAGAAGAATGGATACAGTAAATGTGGTTCATTTACACAATG
GAATACCACTCAGCTATTAGGAATGAGGATATCCTGAGTTTTGCAGGCAA
ATTGATTGGACTAGAAAATATCATCCTGAGTGAGGTAACTCAGACCCAAA
AGGACAGACATGGTCTTATTTATAAGTGGATATTAGCAAAANAACACAAA
ACAAATATATATGAGCCAAAAAGAAAAAGAAACAGGAAAAGAATAGAAAA
GTCCAGATTACCTAAAATTCCGTAACACAGAATGGCCCAATGGTCCAACA

NNCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTATAGTTCTCATCATCATTATT
GTGGTTTAAGTGTAAAATGTACCCCCATATGCTCACTTGGTTCCCAGTTG
GTGGTAATATTTGAGGATGTTGCAGAACAAGTAGGAGGTAGGATGTCACT
GAAGGAAGTTGGTGAATCTTAAAAGCAAGTGAGGTTTCATAGCCCCACCC
ATTTTTTTGTTCAGTGTTCTTGCCTGTGGAGTCAATATAACCAACCAATA
TCATGCTGTTGTTGATATTTCATCCCTTTCTACCATAATGGCCTTCCTCA
TCATAACAGAATTAGCTCCTCAATCTATCCACCAAAAGAAACTCTTCTTT
CCTTAAATTGTTTCTGATCTGATAGTTGTTCATCAAAGAAAGAAACTTAA
AAAAAAAAAAGCTTTCCTGAAATGATGGATGGAATTCTATGTGAAGTTGG
TTCATTCACTAACTGCATCAAATATTTTATTTCAGCAAATGTTTTAACTC
AGTTTTTTTTAATTAAATTTTTGGAGAATTTTGTTGATAAATACAATATT
TTTAATATTTCTACCTCTCTTTATGCTCCAAATTCTCATGAGTCCCCCTT
CCCAATTCACGGTCTCTCAGATTTATATAAAGCCTGCTGGGTCACCCTGG
TGTTACTCATATGTATATGTATTTAAGCCTGAACACTTAAGATTAGATCA
CCTGTCAAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no508_f09.g1 MSMg01no508_f09.g1 CHROMAT_FILE:
MSMg01no508_f09.g1 PHD_FILE: MSMg01no508_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:13 2005
         (567 letters)



>mm_chr14_97550898_97551864
          Length = 967

 Score = 1096 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatagttctcatcatcattattgtggtttaagtgtaaaatgtacccccatatgctcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatagttctcatcatcattattgtggtttaagtgtaaaatgtacccccatatgctcactt 260

                                                                       
Query: 61  ggttcccagttggtggtaatatttgaggatgttgcagaacaagtaggaggtaggatgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttcccagttggtggtaatatttgaggatgttgcagaacaagtaggaggtaggatgtca 320

                                                                       
Query: 121 ctgaaggaagttggtgaatcttaaaagcaagtgaggtttcatagccccacccattttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaaggaagttggtgaatcttaaaagcaagtgaggtttcatagccccacccattttttt 380

                                                                       
Query: 181 gttcagtgttcttgcctgtggagtcaatataaccaaccaatatcatgctgttgttgatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcagtgttcttgcctgtggagtcaatataaccaaccaatatcatgctgttgttgatat 440

                                                                       
Query: 241 ttcatccctttctaccataatggccttcctcatcataacagaattagctcctcaatctat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatccctttctaccataatggccttcctcatcataacagaattagctcctcaatctat 500

                                                                       
Query: 301 ccaccaaaagaaactcttctttccttaaattgtttctgatctgatagttgttcatcaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccaccaaaagaaactcttctttccttaaattgtttctgatctgatagttgttcatcaaag 560

                                                                       
Query: 361 aaagaaacttaaaaaaaaaaaagctttcctgaaatgatggatggaattctatgtgaagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagaaacttaaaaaaaaaaaagctttcctgaaatgatggatggaattctatgtgaagtt 620

                                                                       
Query: 421 ggttcattcactaactgcatcaaatattttatttcagcaaatgttttaactcagtttttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggttcattcactaactgcatcaaatattttatttcagcaaatgttttaactcagtttttt 680

                                                                       
Query: 481 ttaattaaatttttggagaattttgttgataaatacaatatttttaatatttctacctct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaattaaatttttggagaattttgttgataaatacaatatttttaatatttctacctct 740

                                      
Query: 541 ctttatgctccaaattctcatgagtcc 567
           |||||||||||||||||||||||||||
Sbjct: 741 ctttatgctccaaattctcatgagtcc 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)