BAC Information

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BAC

Clone NameMSMg01-509K18
Chromosome14 (Build37)
Map Location 47,955,171 - 48,130,922
singlet/doubletdoublet
Overlap geneLgals3, Dlg7, LOC666895, Fbxo34
Upstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795, C130032J12Rik
Downstream geneD14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509K18.T7 (MSMg01no509_k18.b1)MSMg01-509K18.TJ (MSMg01no509_k18.g1)
ACCAG583293AG583294
length786768
length of high quality
(start - end)
289 (126 - 414)464 (78 - 541)
definitionCHROMAT_FILE: MSMg01no509_k18.b1 PHD_FILE: MSMg01no509_k18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:59 2005CHROMAT_FILE: MSMg01no509_k18.g1 PHD_FILE: MSMg01no509_k18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:38:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,955,171 - 47,955,459)(48,130,459 - 48,130,922)
sequence
CATATTTGCGGTGCTAAAAGAATCATTTTACATAAAGGATCCGCGGAATT
CCCTTTTTCCCCCTGACAGTACAGCCCTGGTTAGCAAAACAGCCACATCT
AATCTGGTTTTCTTAATTAGAAATGGAAGCCCACATAAGTCTAATAACCC
CTTAGCTTTCATTGATAATTAAAAGCTTCCACTTTAATGACAGCTCACAT
TTCTGCTCTGGGCGTGTATGCAGAGGGCTTTTCCGCCACACATCAAGGAG
TGAAGGCACTAATTATTTTCAGTTTACAGCTGAGGAAACACAGAAGGTAA
ATGCTTTGCTTTGTTTTCCTGTTAGCAAAGCCTGGGAGGTGACCAGAAAT
CTGGGGCCTGATGCTAACTCTGTGTTCCTTCCCTTATCAAGAACACACCC
TCAAACCAGGCGTGGTGGCGTACGCCTTTAATCCCAGCACTGGGGAGGCA
GATTCAGCCTTATTTCTTGATCTTCATGGCCTCCCTTCTCTATTTAATGA
ATTCCCTATTACCCCCTTTGTTTCACCTATAATCCCCCGTCTTGTTTCAC
AAAAAATTAACTTTTTTCATTTTTTTCTCCCGCCTTACTAACCATTACTT
TCCTATTTCCTTACCCCTATACAATAATACTATTTTTCCCACTCATTCCG
TTTCTTTATTTTTTCGCTTAACAATCCATTTTTCATCATATATACTTTAT
TTTTCCACTAAGTCTTTCCGTTTTCCACTTACCCTTCTCTTAAGATTCCT
TAATAATGTTCTTCCCTGAAATTCGAAATTTTGTTA
TTATACTGGGTAAGCTGGAGGCCGCCGGTTCAACAACXXXXXXXXXXXXX
XXXXXXXTACCCAAAGAATTCTCTTCNCCTATTTCATTAAACAAGCATAA
AGCCACCGCAGTCTCTGGTTTGCACATTCAAGTAACTTGTCTATCCTCCT
CAAACCCCACAGTTCCCAGCCCACCTTACCACTACCAAAGCAGTGGTCCT
TGTGCTTGGTCCCTCTGGCTCCTGAGCACCTGCCTAGGCTCTAATGGTGC
TCTCAGAGGCTAGCACAGAGGTCAGCAAAGACTCCATCTCCTTCCAGTGT
GCCTTCTACACTGTCTGATGGATTTAAAAAGTACACAGAACATAAAAGAG
TAAAGGCTGTGAGAAGAGAGGGAAGTACCGTGAATATATACACACACAAA
TAATAGACTAACGCCAAAGACTTCAGAAAGCCACTGTACAGTCGACCAGA
TCACAAAATAATGCGGCGCTGTTGTTAACACAAAACCCATAAAGACAGTA
TGAACACTCAGCTAAATGACAAACAGAACAAGAGGCTAAGAACATCAGGC
TATCACAGAGAAATAAAAACAGGAACACTTTGGGGGGTCTGAAGCTGATC
CTGGTATGTAGTCAAATCAGTTCTTAAAGTCTCAGATTTGAAATAAATGT
TAGGTAAACATGTATGGAGACCTCTAACTACTATTAGGAAGGATGAAATA
ATACAGAAAGAACTCCCTCAAAGCACATTAAAAATCTGAAAATTTTAAGT
TACTCATAGTAATAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_k18.b1 MSMg01no509_k18.b1 CHROMAT_FILE:
MSMg01no509_k18.b1 PHD_FILE: MSMg01no509_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:59 2005
         (289 letters)



>mm_chr14_47954971_47955659
          Length = 689

 Score =  543 bits (281), Expect = e-159
 Identities = 287/289 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagcccacataagtctaataaccccttagctttcattgataattaaaagcttccacttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagcccacataagtctaataaccccttagctttcattgataattaaaagcttccacttt 260

                                                                       
Query: 61  aatgacagctcacatttctgctctgggcgtgtatgcagagggcttttccgccacacatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgacagctcacatttctgctctgggcgtgtatgcagagggcttttccgccacacatca 320

                                                                       
Query: 121 aggagtgaaggcactaattattttcagtttacagctgaggaaacacagaaggtaaatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggagtgaaggcactaattattttcagtttacagctgaggaaacacagaaggtaaatgct 380

                                                                       
Query: 181 ttgctttgttttcctgttagcaaagcctgggaggtgaccagaaatctggggcctgatgct 240
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctttggcttcctgttagcaaagcctgggaggtgaccagaaatctggggcctgatgct 440

                                                            
Query: 241 aactctgtgttccttcccttatcaagaacacaccctcaaaccaggcgtg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactctgtgttccttcccttatcaagaacacaccctcaaaccaggcgtg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no509_k18.g1 MSMg01no509_k18.g1 CHROMAT_FILE:
MSMg01no509_k18.g1 PHD_FILE: MSMg01no509_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:59 2005
         (464 letters)



>mm_chr14_48130259_48131122
          Length = 864

 Score =  866 bits (448), Expect = 0.0
 Identities = 460/464 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctatttcattaaacaagcataaagccaccgcagtctctggtttgcacattcaagtaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cctatttcattaaacaagcataaagccaccgcagtctctggtttgcacattcaagtaact 605

                                                                       
Query: 61  tgtctatcctcctcaaaccccacagttcccagcccaccttaccactaccaaagcagtggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tgtctatcctcctcaaaccccacagttcccagcccaccttaccactaccaaagcagtggt 545

                                                                       
Query: 121 ccttgtgcttggtccctctggctcctgagcacctgcctaggctctaatggtgctctcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ccttgtgcttggtccctctggctcctgagcacctgcctaggctctaatggtgctctcaga 485

                                                                       
Query: 181 ggctagcacagaggtcagcaaagactccatctccttccagtgtgccttctacactgtctg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 484 ggctagcacagaggtcagcaaagactccatctccttccagtgtgccttctacactggcag 425

                                                                       
Query: 241 atggatttaaaaagtacacagaacataaaagagtaaaggctgtgagaagagagggaagta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atggatttaaaaagtacacagaacataaaagagtaaaggctgtgagaagagagggaagta 365

                                                                       
Query: 301 ccgtgaatatatacacacacaaataatagactaacgccaaagacttcagaaagccactgt 360
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 364 ccgtgaatatatacacacacaaataatagactaaggtcaaagacttcagaaagccactgt 305

                                                                       
Query: 361 acagtcgaccagatcacaaaataatgcggcgctgttgttaacacaaaacccataaagaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 acagtcgaccagatcacaaaataatgcggcgctgttgttaacacaaaacccataaagaca 245

                                                       
Query: 421 gtatgaacactcagctaaatgacaaacagaacaagaggctaaga 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtatgaacactcagctaaatgacaaacagaacaagaggctaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)