Query= MSMg01no509_p15.b1 MSMg01no509_p15.b1 CHROMAT_FILE:
MSMg01no509_p15.b1 PHD_FILE: MSMg01no509_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:25 2005
(497 letters)
>mm_chr14_111663391_111664287
Length = 897
Score = 886 bits (458), Expect = 0.0
Identities = 487/502 (97%), Gaps = 10/502 (1%)
Strand = Plus / Minus
Query: 1 tgctgcctcaaccacacaggatatgttcctggtgtataggtattattgccaaatgtgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgctgcctcaaccacacaggatatgttcctggtgtataggtattattgccaaatgtgctc 638
Query: 61 aagaaaaaaatttcagtacctatgtatggatattaaattgtacatgggtgacaaagagaa 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 aagaaaaagatttcagtacctatgtatggatattaaattgtacatgggtgacaaagagaa 578
Query: 121 gatcaggggcttaaggctgcccatggatacctagatattggaagccagcctgaaagacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gatcaggggcttaaggctgcccatggatacctagatattggaagccagcctgaaagacct 518
Query: 181 gtgaccatttttcaactatcctttgaaaaagtatttttacatataatagaactagttaat 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtgaccatttgtcaactatcctttgaaaaagtatttttacatataatagaactagttaat 458
Query: 241 gacttttttt-----atactgtccataatgtgtgcacagaatattgagttttaaagttag 295
||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gac-----ttgaaaaatactgtccataatgtgtgcacagaatattgagttttaaagttag 403
Query: 296 ggcaataaatatgaagaacagttctaataaaaaaatgactaattctgcctctaagaaaga 355
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 402 ggcaataaatatgaagaacagttctaataaaaaaatgaataattctgtctctaagaaaga 343
Query: 356 aaaggttgatgaaatctataattttaaatgttgagtataccaccaaagaaattagtatta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aaaggttgatgaaatctataattttaaatgttgagtataccaccaaagaaattagtatta 283
Query: 416 aaaaccaaccattgataaactcaaaaatattttaggcttctttaaagcattagggcattt 475
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aaaaccgaccattgataaactcaaaaatattttaggcttctttaaagcattagggcattt 223
Query: 476 cttcagcattttaattatatgg 497
||||||||||||||||||||||
Sbjct: 222 cttcagcattttaattatatgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no509_p15.g1 MSMg01no509_p15.g1 CHROMAT_FILE:
MSMg01no509_p15.g1 PHD_FILE: MSMg01no509_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:25 2005
(673 letters)
>mm_chr14_111489136_111490209
Length = 1074
Score = 1033 bits (534), Expect = 0.0
Identities = 639/677 (94%), Gaps = 11/677 (1%)
Strand = Plus / Plus
Query: 5 taaaactgattttcaaatgtttcaccgacacacatcgaatagaaagtagaaata-tttaa 63
||||||||||||||||||| ||| ||||||||| |||||||||||||||||| |||||
Sbjct: 205 taaaactgattttcaaatgcctcaaggacacacatggaatagaaagtagaaatattttaa 264
Query: 64 atgatacg-gtagatgaatgaaaccaaggaaataagctctccatataaaacagcatggac 122
| || | | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagaca-gagtggatgaatgaaaccaaggaaataagctctccatataaaacagcatggac 323
Query: 123 atataaaagaacttatgaggaacttgacagcacatatttggcttagatggattaaattca 182
| | |||||||||||||| ||||||||||||| ||| |||||||||||||||||||||
Sbjct: 324 acacaaaagaacttatgaagaacttgacagcatgtatagggcttagatggattaaattca 383
Query: 183 tacagggttccagccctaagaggaattatcaaatgtttctaannctagtgcttctgcagn 242
|||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct: 384 tacagggttccagccctaagaggaattatcaagtgtttctaattccagtgcttctgcagt 443
Query: 243 aagatagaagcagaagcgggatttctaaaaaacttattggtgttttatgccatctaaaaa 302
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 aagatagaagcagaagcaggatttctaaaaaacttattggtgttttatgccatcaaaaaa 503
Query: 303 caacactgggaagagtacgccacttagctatgcaattccaaatggtcaacactgaaaaca 362
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 caacactgggaagagtatacaacttagctatgcaattccaaatggtcaacactgaaaaca 563
Query: 363 aagacatgactaacaagaaaaactgagaggttgtattttgtatttagaaatatatgtgta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagacatgactaacaagaaaaactgagaggttgtattttgtatttagaaatatatgtgta 623
Query: 423 tacatatatacatattatgcatatatat----catatctgtatatatacacatgtccatg 478
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 624 tacatatatacatattatgtatatatatatatcatatctgtatatatacacatgtccatg 683
Query: 479 catatgtacacatatacatatatgcacatgtgttttatacatgtgtacatataagtaaat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 catatgtacacatatacatatatgcacatgtgttttatacatgtgtacatataagtaaat 743
Query: 539 atatctctacacacatatacatgtgtatattatatacatatatacatgaatgtagtaaca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atatctctacacacatatacatgtgtatattatatacatatatacatgaatgtagtaaca 803
Query: 599 tacacaaaataaaaaaatgagaagactt-gaaagagagnca-ggaggagtaattagaaga 656
||||||||| |||||| ||||||||||| ||||||||| || ||||||||||||||||||
Sbjct: 804 tacacaaaagaaaaaa-tgagaagactttgaaagagag-caaggaggagtaattagaaga 861
Query: 657 gtttggagggaggaaag 673
|||||||||||||||||
Sbjct: 862 gtttggagggaggaaag 878
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space: 705432
Effective search space used: 705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
