BAC Information

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BAC

Clone NameMSMg01-510B01
Chromosome14 (Build37)
Map Location 99,350,378 - 99,351,011
singlet/doubletsinglet
Overlap genenone
Upstream geneDach1, LOC635593, LOC619716
Downstream geneLOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510B01.T7 (MSMg01no510_b01.b1)MSMg01-510B01.TJ (MSMg01no510_b01.g1)
ACCAG583589AG583590
length725731
length of high quality
(start - end)
638 (54 - 691)649 (83 - 731)
definitionCHROMAT_FILE: MSMg01no510_b01.b1 PHD_FILE: MSMg01no510_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:32 2005CHROMAT_FILE: MSMg01no510_b01.g1 PHD_FILE: MSMg01no510_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTGTTTATGCTAACACAGTTTTATAATAAAGAATAA
AAGGGAAATAGCAAATCTTACAAAAGAGTCAGGATTCCACTAAGTCAAAG
GAAGTATTGCTTAAACTCCACAGAAAGTCAGTGGCTAAGGCAGAGTTAAG
TCAGTCGATAGCTGAAAGACAAGTCTTCAAGAAAAACCAACAAGGAAGTT
TTTCAGAGGGAGATTCAAATGCCACAGAACTTTCCTTGTACGAATTATAG
CATCTGTGAGTAACTTGCAAACAGTTGGTTTTTTTCATGGCCTTGCCCAG
GCATCCACCCCTTCTCCAGGGACCTGAGCTGAGCTACCAGTCTGCAGGAC
TGAGTTCACCTGAAGCTGGTGGGAGGCAGATGGGCTCCTTTCTGGGCACA
TATTTGAAAATAAAATCCCTGTTTGACTAGATACAGGAGCAACCAAACAT
ATTTGTGTAATTCGTTTTCTAAATAAGGGCCCTTCCCTCTGGGGGAAGGT
GGAGAACCAGTCACATTTTGGTAAGCATTTTCAAGTGAAGTCACAGACAG
TCCTCTTTTTCTCCAGAACCAATTATGCTCAGATGCTGAGGTTGGACAGA
TTTCCTCTCCCTTATGTCTCTAAGAGCTTCTAATGAGACCATCTATGTTA
TACAAATATTATAACAAGAGTAATT
NNCCCCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTACTAAAACCATCTGG
CCAGGGGCAAAAGCCCGAAGGGAGTTTCTGAGTTCAAGGCCAGCCTGATA
TATAGAGACTTTTTAATGACTATTTTTGTTTCACTAGGGGTTATAGGTTT
ATTTAAACTATTAATCTGATCTTAATTTTAATTTAACTTTGGTAAGTGGT
ATCTATTGAGAAAATTATCCTTTTTTTAAAGCCTTTTTTTTCAATCTGGT
GAATACAGGTTTTTAAAGAATTTTCTTAAGAGTCTCTGGATTTCATTGGT
GTCTGTCTGCATTGGCTATATGTTCTTTTCATTTCTTATTTTTTAATTTA
GACATGCTCTCTCTGTCTTTTAGTTAGTTCAGATAAGGGTTTATCTAGCT
TGTTAATTTTCTCAAAGAACTACCTCTTGTGTCATTGGTTCTTTGTGTTG
CTCTTTGTTTCTATTGTATTGTTTTTAGCCCCCACTTTGACTATTTCTTG
CTGCCACTCCTCTTGGGTGTGATTACTTTTTTTTTGTTCTGGTGCTCTCA
GGTGTGCTGTTAAGTTGCTGTATGGGATTCCTCCATTTTTCTTTCTACAT
GTAGGCTCAGTGCTATGAACTTCCCTCTACACTGTTTTCTGTGTCCCACA
AGTTTGAGTATATTGTGTACTCATTGTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_b01.b1 MSMg01no510_b01.b1 CHROMAT_FILE:
MSMg01no510_b01.b1 PHD_FILE: MSMg01no510_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:32 2005
         (638 letters)



>mm_chr14_99350174_99351211
          Length = 1038

 Score = 1226 bits (634), Expect = 0.0
 Identities = 634/634 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtttatgctaacacagttttataataaagaataaaagggaaatagcaaatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttatgctaacacagttttataataaagaataaaagggaaatagcaaatc 264

                                                                       
Query: 65  ttacaaaagagtcaggattccactaagtcaaaggaagtattgcttaaactccacagaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttacaaaagagtcaggattccactaagtcaaaggaagtattgcttaaactccacagaaag 324

                                                                       
Query: 125 tcagtggctaaggcagagttaagtcagtcgatagctgaaagacaagtcttcaagaaaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagtggctaaggcagagttaagtcagtcgatagctgaaagacaagtcttcaagaaaaac 384

                                                                       
Query: 185 caacaaggaagtttttcagagggagattcaaatgccacagaactttccttgtacgaatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caacaaggaagtttttcagagggagattcaaatgccacagaactttccttgtacgaatta 444

                                                                       
Query: 245 tagcatctgtgagtaacttgcaaacagttggtttttttcatggccttgcccaggcatcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tagcatctgtgagtaacttgcaaacagttggtttttttcatggccttgcccaggcatcca 504

                                                                       
Query: 305 ccccttctccagggacctgagctgagctaccagtctgcaggactgagttcacctgaagct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccccttctccagggacctgagctgagctaccagtctgcaggactgagttcacctgaagct 564

                                                                       
Query: 365 ggtgggaggcagatgggctcctttctgggcacatatttgaaaataaaatccctgtttgac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtgggaggcagatgggctcctttctgggcacatatttgaaaataaaatccctgtttgac 624

                                                                       
Query: 425 tagatacaggagcaaccaaacatatttgtgtaattcgttttctaaataagggcccttccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagatacaggagcaaccaaacatatttgtgtaattcgttttctaaataagggcccttccc 684

                                                                       
Query: 485 tctgggggaaggtggagaaccagtcacattttggtaagcattttcaagtgaagtcacaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tctgggggaaggtggagaaccagtcacattttggtaagcattttcaagtgaagtcacaga 744

                                                                       
Query: 545 cagtcctctttttctccagaaccaattatgctcagatgctgaggttggacagatttcctc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagtcctctttttctccagaaccaattatgctcagatgctgaggttggacagatttcctc 804

                                             
Query: 605 tcccttatgtctctaagagcttctaatgagacca 638
           ||||||||||||||||||||||||||||||||||
Sbjct: 805 tcccttatgtctctaagagcttctaatgagacca 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)