BAC Information

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BAC

Clone NameMSMg01-510B05
Chromosome14 (Build37)
Map Location 74,347,247 - 74,347,813
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2, LOC100043734
Downstream geneEG629578, LOC629583, Htr2a, LOC668508, Esd, Lrch1, ENSMUSG00000075519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510B05.T7 (MSMg01no510_b05.b1)MSMg01-510B05.TJ (MSMg01no510_b05.g1)
ACCAG583597AG583598
length734734
length of high quality
(start - end)
669 (54 - 722)643 (81 - 723)
definitionCHROMAT_FILE: MSMg01no510_b05.b1 PHD_FILE: MSMg01no510_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:33 2005CHROMAT_FILE: MSMg01no510_b05.g1 PHD_FILE: MSMg01no510_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAAGGGTTCTGAGGTGGGAGTGGGTGTATGGGTGGGTA
AGCACCCTCATAGAAGCAGGGGGTGGTATATGGAGGTTCCCCTGGAACTG
GAAGAGGGATAACATTTGAAATGGAAATAAATAAAATAACCAATTTTAAA
AAAGATAATTGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTG
CTCTTCCAAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTTA
TAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTAAAAACA
GCTAGAGTGTACTCACATACATAAAATAAGTAGATAAATCTTAAAAATAA
AGTAAAAAAAAAAAGATAATTGGTGATTATAAACTGTAAGAGCCTGAGGT
CCGGGCATACTTCTTTGAGACAGTGTCTTTGACTCAACAGAGATGTTGTC
CTATGACCTCAGAGCAGCTGGGGTGGCCTGCACAAAATCTCTATCAGATC
AAGCCAATCAACAATCCCACATAGATGAGGAGGGACTCACAGGGTCTCAT
CCTTAGCTCAGGAGCCTTGGCTGGGAAGGATACTGGGATAGGGAAGTCAG
ATTTCTTCAGGGAAGTGGCCCCACGCAGGTTGCCCATGTTTTAGTGGGTG
GCTCTACACTTATGCACACTCAAGTGGCCCTAAC
TTTTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGACTGACAAGTCTAACT
CTACAAATAAGCAAACTAAGTCCCAAGAGAGCCAATGGCATGAATTCAAT
CCCAAGACCAGCGGGTAAAGAATTTCATAGTACTTGAGTAGGGAGAGATT
CTGCTGTTGTTGTTCTGATTAATGAGGCTAGCCTATCTTCTACAGGAAAC
AATACCAATTAAAATGTTAATTGGGTCCCACAACTCTTTAACAAACATGT
GAAATATTGTTTGACCAAATACCTGAGCACTCTGGCCCAGTCAATTGCCA
TATGAGTGGTCAAAGTTAACAAGTGGTGAGCTTTCAAATGTTTCTTGAAT
CTATGATCTACCCTGAGTTTCAAGGGCTCTAAGGATACACACAGAGACTG
ATCCTTAGAGAGACAATTCTTTCATCTAGTAAATAGATTTTTTTCCTCAA
TCCTTTGTTCTTTAGAGAGCATAGAACAAAGGAGAAATGAGATGTGCCCA
AGACTTGCTCTCATTAAATTATAGCCACTTCAAAGGTCAGTGTTTGGGCA
TTTGTGAATCCAATGGGCCATGTTAGTACTGTCATCTTACCTGTCCCTCC
TCCCAGTAGACTTATGTACAGAGGATCTGGAGGAGCTGCTGCTTGCCAAA
AAACGCCTCAAATATCCCACAACATTCCTAGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_b05.g1 MSMg01no510_b05.g1 CHROMAT_FILE:
MSMg01no510_b05.g1 PHD_FILE: MSMg01no510_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:33 2005
         (643 letters)



>mm_chr14_74346772_74347815
          Length = 1044

 Score = 1065 bits (551), Expect = 0.0
 Identities = 563/567 (99%), Gaps = 1/567 (0%)
 Strand = Plus / Minus

                                                                        
Query: 78   ccagcgggtaaagaatttcatagtacttgagtagggagagattctgctgttgttgttctg 137
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1042 ccagcgggtaaagaatttgatagtacttgagtaggaagagattctgctgttgttgttctg 983

                                                                        
Query: 138  attaatgaggctagcctatcttctacaggaaacaataccaattaaaatgttaattgggtc 197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982  attaatgaggctagcctatcttctacaggaaacaataccaattaaaatgttaattgggtc 923

                                                                        
Query: 198  ccacaactctttaacaaacatgtgaaatattgtttgaccaaatacctgagcactctggcc 257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922  ccacaactctttaacaaacatgtgaaatattgtttgaccaaatacctgagcactctggcc 863

                                                                        
Query: 258  cagtcaattgccatatgagtggtcaaagttaacaagtggtgagctttcaaatgtttcttg 317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862  cagtcaattgccatatgagtggtcaaagttaacaagtggtgagctttcaaatgtttcttg 803

                                                                        
Query: 318  aatctatgatctaccctgagtttcaagggctctaaggatacacacagagactgatcctta 377
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802  aatctatgatctaccctgagtttcaagggctctaaggatacacacagagactgatcctta 743

                                                                        
Query: 378  gagagacaattctttcatctagtaaataga-tttttttcctcaatcctttgttctttaga 436
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 742  gagagacaattctttcatctagtaaatagattttttttcctcaatcctttgttctttaga 683

                                                                        
Query: 437  gagcatagaacaaaggagaaatgagatgtgcccaagacttgctctcattaaattatagcc 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682  gagcatagaacaaaggagaaatgagatgtgcccaagacttgctctcattaaattatagcc 623

                                                                        
Query: 497  acttcaaaggtcagtgtttgggcatttgtgaatccaatgggccatgttagtactgtcatc 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622  acttcaaaggtcagtgtttgggcatttgtgaatccaatgggccatgttagtactgtcatc 563

                                                                        
Query: 557  ttacctgtccctcctcccagtagacttatgtacagaggatctggaggagctgctgcttgc 616
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 562  ttacctgtccctcctcccagaagacttatgtacagaggatctggaggagctgctgcttgc 503

                                       
Query: 617  caaaaaacgcctcaaatatcccacaac 643
            |||||||||||||||||||||||||||
Sbjct: 502  caaaaaacgcctcaaatatcccacaac 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space:   654522
Effective search space used:   654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)