BAC Information

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BAC

Clone NameMSMg01-510F24
Chromosome14 (Build37)
Map Location 97,290,863 - 97,291,130
singlet/doubletsinglet
Overlap geneLOC668654
Upstream geneKlhl1, LOC100043366
Downstream geneEG668659, Dach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510F24.T7 (MSMg01no510_f24.b1)MSMg01-510F24.TJ (MSMg01no510_f24.g1)
ACCAG583826AG583827
length734752
length of high quality
(start - end)		684 (51 - 734)270 (80 - 349)
definitionCHROMAT_FILE: MSMg01no510_f24.b1 PHD_FILE: MSMg01no510_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:57 2005CHROMAT_FILE: MSMg01no510_f24.g1 PHD_FILE: MSMg01no510_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTGACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGAAATGTTCCCTGGAAAAAAGTATCTCCAACAAATAGTG
TAAATCAAAGTGCATGCTTGCACATATAAGTATCCAAGTAGACTCATATT
TATTATATTATATAAAACGCACGCCAAAGTGAGCTAAGACTCCTAGAAAT
GGAGAAAGAATATTGAAACCAAAGCAGACATCTCATGTAAGAAGGCAAAA
CTTCCAATGGAGGAATTAGGACACCAATCCAGCTACAAAACCTCATACCT
ACAATTTGTCTTGCCTTCAGGATATACAGCAATAAAATGTGAAGCAGAAT
TTTAGGGAAAGGACTATCGATGACTGATCCAGATTGTGACCCATGCCATG
AGAGGGAGCCTGTTCTGACACTATTACTGATATTCAGCTATATGTTCAAA
CAGGAAGCCTACATAACTGTCATTAGAAAGGCTTCAGATGTTCTTTCAGG
TGCTTCTCAGCCATTTGGTAATTCCTCAGGTGAGAATTCTTTGTTTAGCT
CAGCACCCCATTTTTAATGGGGTTATTTGATTTCCTGGAGTCCACCTGCT
TGAGTTCTTTGTATATATTGGATATTAGTCCCCTATCTGATTTAGGATAG
GTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGGT
GTCTTTTGCCTTACAGAAGCTTTGCAATTTTAAG

NTTTCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGATCCATTGGACAACTGACA
TTGTAGGAGAGCTCTCGGAAGTCATTAACACAACTAATCTGCTTGAAGGA
GGTATTTAGTAAAGAACAGAAACCAGAAAACCAGGTTTTATAAACATGTT
AGACTGCTGTATTAATGATCAAGAGCTATAAAAGTGAACAGATATTGCAA
ACATTCTTGAGAATCAAGTCTATAATATCCTAGTTAGGTTGAAAGACGTT
GTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGNNN
NNNNNNNNNNNNTTTTTTTTTTTTNTNNTTNTTTTTTTNTTTTTTTTTTT
TTTTTTNTTNTTNTTTTTNTTTTNNNNNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTT
TNTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TCCTTTTCTTTTTTCCTTTTTTTTTTNNTTTTCTCTTTTTTTTTTTTTTT
TTTTTTTTTTNNTTCTCTTTCCCTTTTTCTCTTTTTTTTCCCCCTCTTTT
TCTTTCCCTTTTTCCCTTTTTTTTTTTTTTTCCTCTTCCTCTCCTTCTCT
TTCCTCCTTCCCCCCTTTTTTCCTTTCTTTCTTCTTCCTCTCTTTTTCTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_f24.g1 MSMg01no510_f24.g1 CHROMAT_FILE:
MSMg01no510_f24.g1 PHD_FILE: MSMg01no510_f24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:57 2005
         (270 letters)



>mm_chr14_97290711_97291380
          Length = 670

 Score =  511 bits (264), Expect = e-149
 Identities = 267/268 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgatccattggacaactgacattgtaggagagctctcggaagtcattaacacaactaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgatccattggacaactgacattgtaggagagctctcggaagtcattaacacaactaatc 361

                                                                       
Query: 61  tgcttgaaggaggtatttagtaaagaacagaaaccagaaaaccaggttttataaacatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgcttgaaggaggtatttagtaaagaacagaaaccagaaaaccaggttttataaacatgt 301

                                                                       
Query: 121 tagactgctgtattaatgatcaagagctataaaagtgaacagatattgcaaacattcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tagactgctgtattaatgatcaagagctataaaagtgaacagatattgcaaacattcttg 241

                                                                       
Query: 181 agaatcaagtctataatatcctagttaggttgaaagacgttgtgtgtgtgtgtgtgtgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 agaatcaagtctataatatcctagttaggttgaaagacgttgtgtgtgtgtgtgtgtgtg 181

                                       
Query: 241 tgtgtgtttgtgtgtgtgtgtgtgtgtg 268
           ||||||| ||||||||||||||||||||
Sbjct: 180 tgtgtgtgtgtgtgtgtgtgtgtgtgtg 153


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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